Message-ID: <m2hdb7yps5.fsf@fhcrc.org>
Date: 2005-10-24T14:04:42Z
From: Seth Falcon
Subject: [Bioc-devel] aafTableAnn() in annaffy_1.0.18 ?
In-Reply-To: <435D3FDF.4020805@seu.edu.cn> (xinan yang's message of "Mon, 24 Oct 2005 16:11:11 -0400")
Hi Xinan,
On 24 Oct 2005, xnyang at seu.edu.cn wrote:
> I downloaded the package annaffy_1.0.18.tar.gz, installed it.
>
> Following the vgnette, I met error ad below:
>
> data(aafExpr) probeids=geneNames(aafExpr)
> anncols=aaf.handler()[c(1:3,8:9,11:13)]
> temp=aafTableAnn(probeids[1:5],"hgu95av2",anncols) Error in
> mget(c("1027_at", "1065_at", "1088_at", "1096_g_at", "1099_s_at" :
> recursive default argument reference
>
>
> Who can help me to solve it?
> I use R 2.1.1 in Redhat 9.
It might be difficult for the experts to give you good advice without
more detailed information about what you have installed. Please post
the output of sessionInfo() called just after you see your error.
traceback() might also be useful (call it _before_ calling
sessionInfo()).
Also, note that a new version of R and Bioconductor are available and
they both include many bug fixes. It might be best to upgrade first
and see if the problem still exists.
Best,
+ seth