[Bioc-devel] Devel build report errors
On Mon, Jul 8, 2024 at 11:21?AM Martin Grigorov <mgrigorov at apache.org> wrote:
Hi, On Mon, 8 Jul 2024 at 11:14, Rodrigo Arcoverde Cerveira < rodrigo.arcoverdi at gmail.com> wrote:
Hi all, We are trying to implement a new tool in scifer package, and I have a few questions about compatibility and build reports. 1. I am getting the following error in build for Linux (openEuler 22.03 LTS-SP1) / aarch64. ``` error: dependency ?sangerseqR? is not available for package ?scifer? ``` However, when I check the devel build report for sangerseqR it seems to be passing without errors and only its dependent packages are getting this error.
I will check what?s issue on openEuler! The installation of some packages timed out after the update of R to 4.4.1. Everything should be back to normal in the next few days!
BiocManager::install(c("sangerseqR"))
Bioconductor version 3.20 (BiocManager 1.30.23), R 4.4.1 (2024-06-14) Installing package(s) 'sangerseqR' trying URL ' https://bioconductor.org/packages/3.20/bioc/src/contrib/sangerseqR_1.41.0.tar.gz ' Content type 'application/x-gzip' length 2903474 bytes (2.8 MB) ================================================== downloaded 2.8 MB * installing *source* package ?sangerseqR? ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sangerseqR) It should be good now!
1. Besides that, we are having the same error in Windows and macOS
13.6.5 Ventura. This new function we are trying to implement relies on a
conda environment (basilisk). The issue is that the packages we need in
conda are not available for all the platforms so I get an error that the
packages we need are not found.
```
PackagesNotFoundError: The following packages are not available from
current channels:
- dnaio=1.2.1
- igblast=1.22.0
```
1. Finally, is it mandatory to be compatible with windows?
Hope someone can help ?
Best regards,
Rodrigo
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