On Jun 24, 2019, at 7:17 PM, Pages, Herve <hpages at fredhutch.org> wrote:
Hi Paul,
After a long hunt, the software package causing these daily
reinstallations of BSgenome.Hsapiens.UCSC.hg38 has been
identified and his maintainer contacted.
Sorry for the inconvenience this has caused so far.
H.
On 6/24/19 12:31, Paul Shannon wrote:
Warning in .seqlengths_TwoBitFile(x) : mustOpen:
Can't open /home/biocbuild/bbs-3.9-bioc/R/library/BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit
to read: No such file or directory
Timing stopped at: 0.176 0 0.175 Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed
I get these errors almost every day - today on malbec2 (ubuntu) and tokay2 (windows).
Any advice?
- Paul
--
Herv? Pag?s
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpages at fredhutch.org
Phone: (206) 667-5791
Fax: (206) 667-1319