[Bioc-devel] problem with git / svn transition: ssh keys

On Sep 12, 2017, at 1:26 PM, Luo Weijun <luo_weijun at yahoo.com> wrote:

Well, I modified the file acces by:
chmod 400 ~/.ssh/id_rsa

it goes further, but the passphrase I stored seems not work (as below). I couldn?t change passphrase either due to the same problem. Can I remove the old ssh key, regenerated/resubmit a new key? What?s the best way to proceed?

luo$ git clone git at git.bioconductor.org:packages/pathview
Cloning into 'pathview'...
Enter passphrase for key '/Users/luo/.ssh/id_rsa': 
Enter passphrase for key '/Users/luo/.ssh/id_rsa': 
Enter passphrase for key '/Users/luo/.ssh/id_rsa': 
Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

--------------------------------------------
On Tue, 9/12/17, Turaga, Nitesh <Nitesh.Turaga at RoswellPark.org> wrote:

Subject: Re: problem with git / svn transition: ssh keys
To: "Luo Weijun" <luo_weijun at yahoo.com>
Cc: "Morgan, Martin" <Martin.Morgan at RoswellPark.org>, "Bioc-devel" <bioc-devel at r-project.org>
Date: Tuesday, September 12, 2017, 12:39 PM

http://bioconductor.org/developers/how-to/git/faq/

You need point#16 on the FAQ section. 

Change your permissions. 

On Sep 12, 2017, at 12:35 PM, Luo

Weijun <luo_weijun at yahoo.com>
wrote:

The original file name was

id_rsa.pub.pub.

I changed it to id_rsa.pub or

id_rsa now. It stops complaining about the invalid format,
but still have permission problem.

##id_rsa.pub
luo$ git clone git at git.bioconductor.org:packages/pathview
Cloning into 'pathview'...
Permission denied (publickey).
fatal: Could not read from remote

repository.

Please make sure you have the

correct access rights

and the repository exists.

##id_rsa
git clone git at git.bioconductor.org:packages/pathview
Cloning into 'pathview'...

@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

@        

WARNING: UNPROTECTED PRIVATE KEY FILE!     
    @

@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Permissions 0644 for

'~/.ssh/id_rsa' are too open.

It is required that your private

key files are NOT accessible by others.

This private key will be ignored.
Load key "~/.ssh/id_rsa": bad

permissions

Permission denied (publickey).
fatal: Could not read from remote

repository.

Please make sure you have the

correct access rights

and the repository exists.

--------------------------------------------

On Tue, 9/12/17, Turaga, Nitesh

<Nitesh.Turaga at RoswellPark.org>
wrote:

Subject: Re: problem with git /

svn transition: ssh keys

To: "Luo Weijun" <luo_weijun at yahoo.com>
Cc: "Morgan, Martin" <Martin.Morgan at RoswellPark.org>,

"Bioc-devel" <bioc-devel at r-project.org>

Date: Tuesday, September 12, 2017,

12:20 PM

What name did you store your key
under? ?id_rsa? or something

else?

Nitesh

On

Sep 12, 2017, at 12:11 PM, Luo

Weijun <luo_weijun at yahoo.com>

wrote:

the

following the are commands I used

and output:

luo$ git clone git at git.bioconductor.org:packages/pathview
Cloning into 'pathview'...
key_load_public: invalid

format

Permission denied

(publickey).

fatal: Could not read from

remote

repository.

Please make sure you have the

correct access rights

and the repository exists.
luo$  ssh -T git at git.bioconductor.org
key_load_public: invalid

format

Permission denied

(publickey).

Is it because the

ssh key is still not in the right

format because the suffix

" luo_weijun at yahoo.com"
was removed as I mentioned in

previous email?

BTW, my ssh key

should be associated with gage

package too.

--------------------------------------------

On Tue, 9/12/17, Turaga,

Nitesh <Nitesh.Turaga at RoswellPark.org>

wrote:

Subject:

Re: problem with git / svn

transition: ssh keys

To: "Luo Weijun" <luo_weijun at yahoo.com>
Cc: "Morgan, Martin" <Martin.Morgan at RoswellPark.org>,

"Bioc-devel" <bioc-devel at r-project.org>

Date: Tuesday, September 12,

2017, 11:47

AM

Your key is in

our system. It

starts with,

ssh-rsa

AAAAB3NzaC1yc2EAAAADAQABAAACAQD4+kbkP7J0rkIGy81r9fO+4tCgHzQXfkthRu/MFPE7AMvZy7SeNf9WuxPQtMeOjAl

It is associated

with the

correct package

?pathview?

and also ?gageData?. 

Please give me more

information to help you. Show me

the exact commands you

are

running. 

i.e 

      git clone

git at git.bioconductor.org:packages/pathview

If that doesn?t

work,

then,

      ssh -T git at git.bioconductor.org


Check out put for

?pathview? package. Please

also send the email to

Bioc-devel. 

Best,

Nitesh

On Sep 12, 2017,

at 11:39

AM, Luo Weijun <luo_weijun at yahoo.com>
wrote:

Nitesh,
I

resubmit my ssh public key based

on your

suggestion last Friday. But I

still cannot

git clone my

package respository. The

same error remain as below. Can

you

check into this?

Weijun

Cloning

into

'pathview'...

key_load_public:

invalid format

Permission denied

(publickey).

fatal: Could not read from

remote

repository.

Please make sure you have

the

correct

access rights

and the repository

exists.

--------------------------------------------

On Fri, 9/8/17, Luo Weijun

<luo_weijun at yahoo.com>

wrote:

Subject:

Re:

problem with git / svn transition:

ssh keys

To: "NiteshTuraga" <Nitesh.Turaga at RoswellPark.org>
Cc: "MartinMorgan" <Martin.Morgan at RoswellPark.org>
Date: Friday, September 8,

2017,

12:23

PM

Nitesh,
I

just submitted it. The problem is

gone indeed.

Could

you process my request and

assign

me

the git

access? Thanks.

Weijun

--------------------------------------------

On Fri, 9/8/17, Turaga,

Nitesh <Nitesh.Turaga at RoswellPark.org>

wrote:

    Subject: Re:

problem with git /

svn

transition: ssh keys
    To: "Luo

Weijun" <luo_weijun at yahoo.com>

    Cc: "Morgan,

Martin"

<Martin.Morgan at RoswellPark.org>

    Date: Friday,

September 8, 2017,

10:31

AM

    Hi

Weijun,

  I understand this was a

problem

earlier on our

    end,

and it has been fixed. 

    Is it

still the case that it gives

the
    ?Github ID

cannot contain spaces?

error? If

so,

can you

take a screen shot and send

it to

me.

I?ve tried it a few
    times and it

does not give me

that

error anymore.

    Nitesh

On Sep 8, 2017,

at 10:22

    AM,

Luo Weijun <luo_weijun at yahoo.com>

    wrote:

Nitesh,
As I

mentioned previously, I

tried to
    submit with

the prefix ssh-rsa,

but

it

always

complained

    that

?Github ID

cannot contain

spaces? since

there is a

    space

following

ssh-rsa. I guess it

will allow me

submit if

    I remove the

empty

space, but would

that be a

functional ssh

    key?

BTW, the

web

form error?Github

    ID cannot

contain spaces? seem to

wrong as this

is

ssh key

    submission.

Weijun

--------------------------------------------

On Thu, 9/7/17,

Turaga, Nitesh

<Nitesh.Turaga at RoswellPark.org>
    wrote:

Subject:

    Re:

problem

with git / svn transition:

ssh

keys

To:

"Luo Weijun"

<luo_weijun at yahoo.com>

Cc: "Morgan, Martin"

<Martin.Morgan at RoswellPark.org>

Date: Thursday,

September 7,

2017, 5:20
   

PM

Hi Luo,

The

key we

have on

    file is

missing the

starting

`ssh-rsa`.

    Could you

please

resubmit? 

Best,

Nitesh

On Sep

7, 2017, at 5:04 PM, Luo

Weijun
   

<luo_weijun at yahoo.com>

wrote:

Just want

to make

  sure

that you see my email below.

I

still

have the

same problem at this

time.

Weijun

--------------------------------------------

On Wed, 9/6/17,

Luo Weijun

<luo_weijun at yahoo.com>

wrote:

Subject:

problem

  with

git / svn transition: ssh

keys

    To:

"NiteshTuraga" <Nitesh.Turaga at RoswellPark.org>

Cc: "Martin

Morgan"

<martin.morgan at roswellpark.org>

Date: Wednesday,

September

6,

2017,
  

  11:32

AM

Dear

Nitesh,

I submitted my

ssh

keys

online

yesterday.

However, I

still

cannot git clone

my

    packages

from

github. Could you help me?

Thanks!

The

error message below

see

to

complained

the

public key

format. My ssh public key

looks

like: 

    ssh-rsa

AAAAB3NzaC1y?.FHQ==

luo_weijun at yahoo.com

but the google web

form

always

complained ?Github ID

cannot
    contain

spaces?.

So I

removed the

prefix and

suffix parts:

"ssh-rsa "

and

    " luo_weijun at yahoo.com".

it got through

after that. 

Weijun


$ git clone

git at git.bioconductor.org:packages/pathview

Cloning into

'pathview'...

key_load_public: invalid

format

Permission denied

(publickey).

fatal:

Could not read from

remote

repository.

Please make sure

you have

the
   

correct

access rights
and the

    repository

exists.

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