[Bioc-devel] Minor detail with mirrors

Hi Sean,

This is addressed in BiocInstaller 1.3.2.

Cheers,
H.


On 11-11-02 11:31 AM, Sean Davis wrote:

Hi, all.

I'm using a fresh version of R and BiocInstaller and noticed that
chooseBioCmirror() does not effectively change the bioconductor
repository. ?Perhaps this was by design until the repositories sync
up, but just wanted to bring it up just in case.

Thanks,
Sean

chooseBioCmirror()

BioC mirror

1: Seattle (USA)
2: Bethesda (USA)
3: Dortmund (Germany)
4: Bergen (Norway)
5: Cambridge (UK)

Selection: 2

options('BioC_mirror')

$BioC_mirror
? ? ? ? ? ? ? ? ? ? ? ? ? Bethesda (USA)
"http://watson.nci.nih.gov/bioc_mirror"

BiocInstaller::biocinstallRepos()

? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?BioCsoft
? ? ? ? ? ? ? ? ? ? ? ? ?"http://bioconductor.org/packages/2.10/bioc"
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?CRAN
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? "http://watson.nci.nih.gov/cran_mirror"
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? BioCann
"http://watson.nci.nih.gov/bioc_mirror/packages/2.9/data/annotation"
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? BioCexp
? ? ? ? ? ? ? "http://bioconductor.org/packages/2.10/data/experiment"
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? BioCextra
? ? ? ? ? ? ? ? ? ? ? ? "http://bioconductor.org/packages/2.10/extra"

sessionInfo()

R version 2.15.0 Under development (unstable) (--)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
? [1] LC_CTYPE=en_US.UTF-8 ? ? ? LC_NUMERIC=C
? [3] LC_TIME=en_US.UTF-8 ? ? ? ?LC_COLLATE=C
? [5] LC_MONETARY=en_US.UTF-8 ? ?LC_MESSAGES=en_US.UTF-8
? [7] LC_PAPER=C ? ? ? ? ? ? ? ? LC_NAME=C
? [9] LC_ADDRESS=C ? ? ? ? ? ? ? LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base

other attached packages:
[1] BiocInstaller_1.3.1

loaded via a namespace (and not attached):
[1] tools_2.15.0

--
Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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Seattle, WA 98109-1024

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