Message-ID: <C819BC6D.425A%g-feng@northwestern.edu>
Date: 2010-05-19T21:03:57Z
From: Gilbert Feng
Subject: [Bioc-devel] One to more id mapping for annotation package building
In-Reply-To: <4BF44C9B.1060403@fhcrc.org>
Hi, Marc
Got it! Thanks a lot.
Gilbert
On 5/19/10 3:39 PM, "Marc Carlson" <mcarlson at fhcrc.org> wrote:
> Hi Gilbert,
>
> It sounds like you want to see the manual page for the toggleProbes()
> function. By default, multple mapping probes are not exposed. But they
> ARE in the db and you CAN expose then by using toggleProbes().
>
>
> Marc
>
>
> On 05/19/2010 01:07 PM, Gilbert Feng wrote:
>> Hi, Bioc-dev people
>>
>> I noticed, if one ID, like a lumi nuID, maps two or more refseq ids, which
>> point to different entrez genes, and this information was built in an
>> annotation package by 'makeDBPackage', it will return NA when I use
>> 'lookUp' to retrieve info for that nuID. But if those refseq IDs point to
>> the same entrez id, the correct result is returned. I wonder whether I
>> forget something or current AnnotationDBI does not support this type of
>> one-to-more id mapping.
>>
>> Thanks a lot!
>>
>> Gilbert
>>
>> _______________________________________________
>> Bioc-devel at stat.math.ethz.ch mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>>
>
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