From: "Robert Castelo" <robert.castelo at upf.edu>
To: bioc-devel at r-project.org
Sent: Friday, April 10, 2015 2:33:04 PM
Subject: [Bioc-devel] MafDb.ExAC.r0.3.sites missing from build
hi,
i have just noticed that VariantFiltering breaks in the last build:
http://www.bioconductor.org/checkResults/3.1/bioc-LATEST/VariantFiltering/zin2-buildsrc.html
and the reason is that the devel annotation package
http://www.bioconductor.org/packages/devel/data/annotation/html/MafDb.ExAC.r0.3.sites.html
seems not to be available on the build system during the vignette
execution.
it's strange b/c its landing page shows that the package is there and
other MafDb annotation packages are loaded by VariantFiltering during
the vignette execution without problems.
just to ensure that this is solved for the release/NEWS deadline let
me
know if you think this is something that can be fixed on the build
machine or you prefer that i update VariantFiltering so that it does
not
attempt to load this package during the vignette execution, and we
sort
out the problem after the release.
thanks!!
robert.