[Bioc-devel] Submitting two strongly related packages (software + data)
Hi Nicolas, ----- Original Message -----
From: "Nicolas De Jay" <nicolas.dejay at mail.mcgill.ca> To: bioc-devel at r-project.org Sent: Tuesday, November 5, 2013 4:02:20 PM Subject: [Bioc-devel] Submitting two strongly related packages (software + data) Hi, I have never used a mailing list before so do not hesitate to let me know if I'm doing something wrong. I have been growingly increasingly fond of the Bioconductor project and along with a small intend on submitting a package. We have tried to follow package guidelines as much as possible and noticed a size limit on software packages (4MB). The example data sets will greatly exceed that quota (~150MB) so we figured we'd package the data separately (e.g. minfi and minfiData). In that case, what is the right order for submitting the packages? Of course, the data package will be completely documented first so should we 1. submit the data package, then the software package? (You will have to take our word that the software package is coming up.) 2. submit the software package, then the data package? (The software depends on the data though for the vignette!) 3. submit both at the same time.
Submit both at the same time, to the same issue in our tracker. This makes it easier for us to know that the packages go together.
Also, is there a way to test for Bioconductor compliance like the --as-cran option of the R CMD check command?
Not really. Part of "Bicoonductor compliance" is a subjective human looking at the package and that can't be automated. Reading our guidelines carefully should minimize these problems. However, once you submit a package it will automatically be built and checked on all platforms which may turn up some issues. Dan
Thank you for your help. I'm looking forward to becoming an active developer in the Bioconductor community. --- *Nicolas De Jay * M.Sc. Student Department of Human Genetics Montreal Children's Hospital Research Institute, McGill University Health Centre 4060 Ste Catherine West, PT-239 Montreal, QC H3Z2Z3, Canada T: (514) 412-4440 | E: nicolas.dejay at mail.mcgill.ca [[alternative HTML version deleted]]
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