[Bioc-devel] Bioconductor tools for a website ...
In addition, there is a CRAN package CGIwithR and also a Rcgi package (somewhere on the web...) which provide CGI interfaces to R/Bioconductor. Cheers, Florian Seth Falcon schrieb:
David McKillen <david at mckillen.net> writes:
Dont' mean to be a bother but I can't seem to find a good source for
getting more information. I am trying to determine whether or not I
can access bioconductor applications/tools via the command line for
the purpose of incorporating bioconductor into a website.
You can run R as a command line tool: R --slave < somescript.R You can run in batch mode, which is a bit different: R CMD BATCH somescript.R There is a separate project called littler which behaves more like a typical unix tool than R does on its own. For building web GUIs you might want to look at: Rpad Rserve For more robust webservices approach see this post: https://stat.ethz.ch/pipermail/r-devel/2007-January/044176.html There is also a project called carmaweb: http://nar.oxfordjournals.org/cgi/content/full/34/suppl_2/W498 + seth
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Florian Hahne Abt. Molekulare Genomanalyse (B050) Deutsches Krebsforschungszentrum (DKFZ) Im Neuenheimer Feld 580 D-69120 Heidelberg phone: 0049 6221 424764 fax: 0049 6221 423454 web: www.dkfz.de/mga