[Bioc-devel] Memory error from sesame build
Hi Wanding, A process cannot allocate more than 3Gb of memory on 32-bit Windows. See my other post on this list for more information about this: https://stat.ethz.ch/pipermail/bioc-devel/2021-November/018663.html Cheers, H.
On 22/11/2021 05:17, Zhou, Wanding wrote:
Hi,
Recently we are experience some memory issue on both development and release (mostly Windows) that causes the sesame package build to fail. We are trying to address it but it seems to run fine locally on our side.
This is the error on the development branch
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Error: processing vignette 'sesame.Rmd' failed with diagnostics:
C stack usage 7977908 is too close to the limit
And this is the error on the release branch
data = data.frame(estimate=c(runif(10, 0, 10))) plotLollipop(data)
Error in grid.newpage() : 'Calloc' could not allocate memory (27541715 of 1 bytes) Calls: <Anonymous> -> print.ggplot -> grid.newpage Let me know if you are aware of something or have a clue. Any insight will be super helpful! Thanks! Zoom link: https://us02web.zoom.us/j/4248839577 ---- Wanding Zhou, Ph.D. Assistant Professor Office: CTRB 9050 3501 Civic Center Blvd Philadelphia, PA 19104 Lab: https://zhou-lab.github.io/ Phone (o): (215) 590-0473 [[alternative HTML version deleted]]
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