Message-ID: <MW2PR12MB236485E0F19F479D766EE5A7F9A70@MW2PR12MB2364.namprd12.prod.outlook.com>
Date: 2018-12-12T15:36:22Z
From: Shepherd, Lori
Subject: [Bioc-devel] ClassifyR Check Error on Linux and MacOS Systems
In-Reply-To: <SYCPR01MB411106B44627E2048F406748CDAA0@SYCPR01MB4111.ausprd01.prod.outlook.com>
I tried to build/check your package locally and actually get a different ERROR in the build process ...
You might try using devtools::run_examples() - it runs only the examples in the package
When I use devtools::run_examples()
> ### Name: edgesToHubNetworks
> ### Title: Convert a Two-column Matrix or Data Frame into a Hub Node List
> ### Aliases: edgesToHubNetworks
>
> ### ** Examples
>
> interactor <- sapply(1:10000, function(index)
+ paste(c(sample(LETTERS, 3), sample(1:9, 1)), collapse = ''))
> otherInteractor <- sapply(1:10000, function(index)
+ paste(c(sample(LETTERS, 3), sample(1:9, 1)), collapse = ''))
> edges <- data.frame(interactor, otherInteractor, stringsAsFactors = FALSE)
> edgesToHubNetworks(edges, minCardinality = 4)
Error in object at sets[[1]] : subscript out of bounds
In addition: Warning messages:
1: roxygen2 requires Encoding: UTF-8
2: Removed 2 rows containing missing values (geom_bar).
Loading ClassifyR
I ran this using Bioc 3.9 R 3.6
> sessionInfo()
R Under development (unstable) (2018-12-10 r75821)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.5 LTS
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Dario Strbenac <dstr7320 at uni.sydney.edu.au>
Sent: Thursday, December 6, 2018 8:00:05 PM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] ClassifyR Check Error on Linux and MacOS Systems
Good day,
There is an error for ClassifyR on malbec1 and merida1 caused by a documentation example. However, it doesn't occur on tokay1. Can I get more information about which example is emitting the error on malbec1 server?
--------------------------------------
Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia
_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]