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Message-ID: <BL1PR12MB53013BDEA22575B3A30EF52AF9929@BL1PR12MB5301.namprd12.prod.outlook.com>
Date: 2023-04-03T18:02:56Z
From: Shepherd, Lori
Subject: [Bioc-devel]  About an error in the Multiple platform build/check report for BioC 3.17
In-Reply-To: <730B648D-57D6-4A19-A9A5-7BEBED2FDA8A@contoso.com>

Is this ERROR happening consistently or is it new?

I just went onto the builder and it is installed so perhaps it was intermittent that now is remedied?




Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of You Zhou <you.zhou at bmls.de>
Sent: Monday, April 3, 2023 12:58 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] About an error in the Multiple platform build/check report for BioC 3.17

Hi,

I am the maintainer of the package $B!H(BCLIProfiler$B!I(B. I received an error message for the check step on Linux system. The error message is

$B(!(!(B Error ('test_motifProfile.R:9:5'): motifProfile works as expected $B(!(!(!(!(!(!(!(!(!(!(!(B
Error in `.stopOnAvailablePkg(genome)`: BSgenome.Mmusculus.UCSC.mm10 package is not currently installed.
  You first need to install it, which you can do with:
      library(BiocManager)
      install("BSgenome.Mmusculus.UCSC.mm10")

I think this is due to the package BSgenome.Mmusculus.UCSC.mm10 is not installed on the test machine for the Linux system. So I was wondering if you could help me to check whether the package BSgenome.Mmusculus.UCSC.mm10 has installed on that machine. Thanks in advance.

Best regards,
You Zhou

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