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[Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

Ramon Diaz-Uriarte

Fri, Apr 6, 2018 7:22 AM

Dear All,

Two packages I maintain are showing, in Windows, a warning during check
with messages like

Rd warning:  C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp21WlQD/R.INSTALL23343f935731/OncoSimulR/man/oncoSimulIndiv.Rd:570:  file link 'mclapply' in package 'parallel' does not exist and so has been  treated as a topic

or

Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpQfQaA1/R.INSTALL1ec81d5b6233/ADaCGH2/man/inputToADaCGH.Rd:45: file link 'as.MAList' in package 'limma' does not exist and so has been treated as a topic
  


that I cannot reproduce under Linux and that I think are false
positives. Is there a way to avoid this warning? As far as I can tell,
those links really exist.

Best,


R.

Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid 
Arzobispo Morcillo, 4
28029 Madrid
Spain

Phone: +34-91-497-2412

Email: rdiaz02 at gmail.com
       ramon.diaz at iib.uam.es

http://ligarto.org/rdiaz

Thread (18 messages)

Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6 Vincent Carey BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6 Lluís Revilla BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6 Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6 Martin Morgan BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6 Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 9 Martin Morgan BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 9 Martin Maechler BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 9 Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 16 Vincent Carey BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 18 Martin Morgan BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 18 Vincent Carey BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 18 Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 19 Rahmatallah, Yasir BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 25 Joris Meys BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 26 Shepherd, Lori BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 26 Rahmatallah, Yasir BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 26 Rahmatallah, Yasir BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 26