Message-ID: <CAMgEeFVqur5oCYHuiDC7+CXS2FbqHj9nmPE9-R7SGkDDCi3HgQ@mail.gmail.com>
Date: 2019-03-26T15:57:27Z
From: Karl Stamm
Subject: [Bioc-devel] Unclear build failure ‘appending gaps’
In-Reply-To: <CAOQ5NyfG4hKSK29FwLDba2N3JNGDSdVH3jE=HVehtkm4Mzx2kg@mail.gmail.com>
That first error has resolved, and I have new errors on the build on
Windows and on OSX, while the Linux build goes fine.
I have build and check and test on OSX and Windows on my end and everything
works. There must be something different on the Bioc build servers I am not
matching up with. The OSX errors mention LateX commands, so that's not a
cross platform problem. Might be the build-server configuration.
I'm trying to get that red error sign off my build report, but I can't see
how to work on non-reproducible errors.
On Sat, Mar 23, 2019 at 10:21 AM Michael Lawrence <lawrence.michael at gene.com>
wrote:
> This is due to some buggy changes to the internals of the S4Vectors
> package. I should be able to fix these today.
>
> On Sat, Mar 23, 2019 at 7:41 AM Karl Stamm <karl.stamm at gmail.com> wrote:
>
>> My package rgsepd has failed build recently.
>>
>> I don't understand the error message, and need some guidance. It says
>> Error
>> building vignette, "appending gaps is not supported"
>>
>> I can't find that statement anywhere in Google, so I don't know what it's
>> referring to. Unfortunately, my package is an automation pipeline, so
>> there's one line of code that runs many others, and the line triggering
>> the
>> error could represent any part of my pipeline.
>>
>> I've checked the build on my end before uploading code changes, so I cant
>> reproduce the error. My build was okay until very recently, I have added a
>> CITATION file which is rather lengthy, and may be impacting the vignette
>> build?
>>
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>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
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