Message-ID: <CAF42j20i6UWKRDXgA58L2QqO=6dBv4brA8h3mS0xxMMYA6-uFw@mail.gmail.com>
Date: 2012-03-31T19:00:51Z
From: Dan Tenenbaum
Subject: [Bioc-devel] Packages available in the build system
In-Reply-To: <28559_1333212484_4F773543_28559_14067_1_EE4109F5-5F6A-418B-9BB2-E1B53BB769CB@embl.de>
On Sat, Mar 31, 2012 at 9:46 AM, Nicolas Delhomme <delhomme at embl.de> wrote:
> Hi,
>
> I'm thinking about using the Rcompression library for a package I'm writing and it is only available from the http://www.omegahat.org/R repository. I was wondering if this repo was used by the Bioc build system.
No, it is not.
You can see the repositories used by the build system if you do this:
library(BiocInstaller)
biocinstallRepos()
Dan
> If not, I'd welcome pointers to libraries with similar capabilities, e.g. I'm retrieving compressed fasta files with Rcurl and would like to uncompress them in R.
>
> Thanks!
>
> Nico
>
> ---------------------------------------------------------------
> Nicolas Delhomme
>
> Genome Biology Computational Support
>
> European Molecular Biology Laboratory
>
> Tel: +49 6221 387 8310
> Email: nicolas.delhomme at embl.de
> Meyerhofstrasse 1 - Postfach 10.2209
> 69102 Heidelberg, Germany
>
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