[Bioc-devel] EXTERNAL: BioC 3.6: timeouts on veracruz1 (OS X)

On 10/12/2017 07:08 AM, Ramon Diaz-Uriarte wrote:

Dear All,

I have noticed that on the latest build report, a package I maintain,
OncoSimulR
(http://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/veracruz1-buildsrc.html),

I wonder if it is this issue

   https://github.com/Bioconductor/BiocParallel/issues/67

which would occur if your vignette has parallel code (using 'fork'
processed via parallel::mclapply or indirectly via
BiocParallel::MulticoreParam() / doParallel etc.)

If so then the best strategy is to wait for an upstream fix.

Martin

has status timeout on veracruz1. Package building stalls during
creation of the vignette (that is not happening in the malbec1 ---linux---
build). I have noticed that this same pattern (timeout with build stopped when
creating the vignette in veracruz1 but not in malbec1) seems to affect
other packages
(http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html#show=timeout).

Is there anything we should do? Just looking at the log I do not know how
to proceed.


Thanks,


R.



--
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzobispo Morcillo, 4
28029 Madrid
Spain

Phone: +34-91-497-2412

Email: rdiaz02 at gmail.com
        ramon.diaz at iib.uam.es

http://ligarto.org/rdiaz

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