[Bioc-devel] Vignette update after change in git mirror repo
Nothing strange about this. As I said, all packages are built and checked daily and the build report is updated every day with the new results. But there is a lag between your changes in svn and what you see in the build report. More precisely, yesterday's report didn't reflect your latest changes yet because you made them on Apr 21 after the builds started. The 'Snapshot Date' information on the report tells you when the builds started. Also the 'Last Changed Rev' and 'Last Changed Date' information tells you which revision of your package is showing up in the report. Hope this helps, H.
On 04/23/2017 06:29 PM, Maia Smith wrote:
Thanks, Herv?. Very strange, when I checked that link earlier today, it
appeared to still have errors. All good now!
On Sun, Apr 23, 2017 at 4:49 PM, Herv? Pag?s <hpages at fredhutch.org
<mailto:hpages at fredhutch.org>> wrote:
Hi Maia,
On 04/23/2017 10:09 AM, Maia Smith wrote:
Just an update - the checked in code is passing R CMD check on
my computer
(no errors, 1 warning), and has a version bump from 0.99.9 to
0.99.10, but
I still haven't seen a build attempt on bioconductor since I
committed the
code a few days ago.
Not sure where you are looking at or what you mean exactly by "build
attempt" but, unless our build system is down, every Bioconductor
software package gets built and checked every day. timescape is no
exception:
https://bioconductor.org/checkResults/3.5/bioc-LATEST/timescape/
<https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.5_bioc-2DLATEST_timescape_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=au6Kb9Cm9VY8dX1RswkHcmWguNuvc5kctfqMH0i2CXw&s=8sfhDXEQz-lEhf-yL6sh9-5zs2epIXIHEq5d-v0Y0pg&e=>
Cheers,
H.
I'm a bit worried because I know the release is
occurring tomorrow...
On Sat, Apr 22, 2017 at 3:34 PM, Maia Smith <mas29 at sfu.ca
<mailto:mas29 at sfu.ca>> wrote:
Thank you, Sean and James! I think this fixed the problem,
Sean - will
know when the build is finished today. MUCH appreciated.
On Fri, Apr 21, 2017 at 4:13 PM, Sean Davis
<seandavi at gmail.com <mailto:seandavi at gmail.com>> wrote:
Sorry I lead you astray, earlier, Maia.
In general, you do not need to install the package in
the vignette. The
first code block in the vignette where you did
"eval=FALSE" is the way to
go. The second code block where you actually do the
installation is
unnecessary. The package is installed by R in order to
build the vignette.
Sean
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--
Herv? Pag?s
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpages at fredhutch.org <mailto:hpages at fredhutch.org>
Phone: (206) 667-5791 <tel:%28206%29%20667-5791>
Fax: (206) 667-1319 <tel:%28206%29%20667-1319>
Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319