[Bioc-devel] "'BiocInstaller' package not in repository" error during nightly build
hi Kevin, if you're talking about the devel version of BiocInstaller, the SVN logs show a commit yesterday with some correction on the BiocInstaller package, just svn the last version if you don't want to wait until the newer version gets built: vn export --username readonly --password readonly https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocInstaller BiocInstaller and R CMD build and INSTALL this newer version (1.17.1). cheers, robert.
On 10/16/2014 11:45 AM, Kevin Rue-Albrecht wrote:
Hi Bioconductors, I got the *BUILD* ERROR report below on all platforms last night. Given the fact that I didn't update my package since the last (successful) build, and the error ''BiocInstaller' package not in repository'', I have a feeling this is due to a problem on the build platforms ? In which case, I wonder how many other packages may be affected the same way. Most of the packages seem fine though. I can see that the BiocInstaller package got *CHECK* ERROR on all platforms in the most recent report. Could that be the origin of the problem? In my vignette, I give the typical installation code "biocLite(GOexpress)" which likely caused the build error when trying to load the BiocInstaller library. Thanks in advance for advising me Kind regards, Kevin ############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOexpress ### ############################################################################## ############################################################################## * checking for file ?GOexpress/DESCRIPTION? ... OK * preparing ?GOexpress?: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR Bioconductor version 3.1 (BiocInstaller 1.17.0), ?biocLite for help Error: processing vignette 'GOexpress-UsersGuide.Rnw' failed with diagnostics: chunk 2 Error : ''BiocInstaller' package not in repository' while trying http://bioconductor.org/packages/3.1/bioc Execution halted
Robert Castelo, PhD Associate Professor Dept. of Experimental and Health Sciences Universitat Pompeu Fabra (UPF) Barcelona Biomedical Research Park (PRBB) Dr Aiguader 88 E-08003 Barcelona, Spain telf: +34.933.160.514 fax: +34.933.160.550