Message-ID: <CAL8y_QxCLaKgt--obVrN_kQSC0A8iiYETNA541Wp0JvJUh-dpA@mail.gmail.com>
Date: 2016-11-03T15:57:14Z
From: Marcin Kosiński
Subject: [Bioc-devel] What are the differences between Bioc Views: MethylSeq, DNAMethylation and DifferentialMethylation
In-Reply-To: <CAL8y_Qwir1XHCJ-39m6XxmcbFMY-RG-0XCq36p--Yy2854k=_g@mail.gmail.com>
Links to those Bioc Views:
- http://bioconductor.org/packages/devel/BiocViews.html#___MethylSeq
- http://bioconductor.org/packages/devel/BiocViews.html#___DNAMethylation
-
http://bioconductor.org/packages/devel/BiocViews.html#___DifferentialMethylation
2016-11-03 16:56 GMT+01:00 Marcin Kosi?ski <m.p.kosinski at gmail.com>:
> Dear Bioc devs,
>
> I am looking for a tool to jointly analyze methylation and expression data
> from TCGA.
>
> As I haven't earlier used R for finding differentially methylated bases or
> regions I thought Bioc Views would be a great start to look for the tool to
> analyze the methylation data.
>
> I am wondering: what are differences in those 3 Bioc Views: *MethylSeq,
> DNAMethylation and DifferentialMethylation*. Aren't they all created to
> list packages that aims to manage, analyze and visualize methylation
> datasets? Can't there be one Bioc View called `Methylation`?
>
> Thanks for the response and the indulgence,
> Marcin
>
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