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[Bioc-devel] efficient use of edgeData (graph)

Paul Shannon 
In the RCytoscape package I have a convenience function which returns the values of a specified edge attribute, for all edges in the graph.  It is ponderously slow on a graph of 9000 edges.

I define it this way:

function (graph, edge.attribute.name) {
  unlist (sapply (names (edgeData (graph)), function (n) edgeData (graph)[[n]][[edge.attribute.name]]))
  }

Can anyone suggest ways to speed this up?   I fear I am missing something obvious.

Thanks!

 - Paul

Thread (3 messages)

Paul Shannon efficient use of edgeData (graph) Nov 10 Nishant Gopalakrishnan efficient use of edgeData (graph) Nov 10 Paul Shannon efficient use of edgeData (graph) Nov 10