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[Bioc-devel] makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)

Jialin Ma 
Dear all,


When trying to import the the GTF file downloaded from iGenome using
makeTxDbFromGFF, I figured out that many genes are dropped silently,
probably because those genes happens to have multiple chromosome
locations in that GTF file.?

I have posted it at?https://support.bioconductor.org/p/89401?with no
reply yet. As I find it somehow a problem-causing bug, I decide to send
the information here.

Is there any suggested way to deal with the case?


Best regards,
Marlin

Thread (4 messages)

Jialin Ma makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF) Nov 13 Vincent Carey makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF) Nov 13 Jialin Ma makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF) Nov 13 Martin Morgan makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF) Nov 13