[Bioc-devel] Bioconductor package landing pages
Hi Nitesh -- Thanks very much for the help on this last week. I've been investigating the build problem displayed on the page you linked rather slowly but have reached a point where I now have a question: - The error appears to be due to an example data set not being found. This data set appears in the biotmleData package on Bioc. I've updated biotmleData on both the master and RELEASE_3_5 branches to now contain that data set, but when I install biotmleData via biocLite, I still get version 1.0.0 -- even though RELEASE_3_5 now contains 1.1.0 -- is there something that I am missing here? - The GitHub repos for biotmle <https://github.com/nhejazi/biotmle> and biotmleData <https://github.com/nhejazi/biotmleData> contain both the master and RELEASE_3_5 branch, both of which appear to be fully synced/updated wrt to Bioconductor (i.e., "git pull bioc RELEASE_3_5" returns "Everything up-to-date"), so I don't believe this to be a sync issue. ?Any help in resolving this issue would be much appreciated.?? Warm Regards, ? Nima Hejazi -- Nima Hejazi Doctoral Student Division of Biostatistics University of California, Berkeley van der Laan Group <https://www.stat.berkeley.edu/~laan/> | Hubbard Group <http://hubbard.berkeley.edu/> http://www.stat.berkeley.edu/~nhejazi http://nimahejazi.org | Nima's blog <http://nimahejazi.org/blog/> On Mon, Aug 28, 2017 at 11:58 AM, Turaga, Nitesh <
Nitesh.Turaga at roswellpark.org> wrote:
Hi Nima, Please check http://bioconductor.org/checkResults/3.6/bioc-LATEST/ biotmle/malbec1-buildsrc.html, it shows that the page was generated on Sunday. There is also a snapshot date when your repo was captured by the nightly build, and even the last commit. But this issue, is because your package has an ERROR, and there hasn?t been a version bump. Best, Nitesh
On Aug 28, 2017, at 2:48 PM, Nima Hejazi <nhejazi at berkeley.edu> wrote: Hello All --- After the relatively recent migration from SVN to git, I've followed the various guidelines for linking the GitHub repo <https://github.com/nhejazi/biotmle> of my package biotmle to the Bioconductor git server, I've pushed several important updates to the
Bioc
master branch. My understanding is that the master branch represents the development version (in contrast to RELEASE_3_5). That said, it appears that the
package
landing page for the Bioc development version <https://www.bioconductor.org/packages/devel/bioc/html/biotmle.html>
does
not reflect the current status of the master branch of the Bioc git
history.
Perhaps I am missing something simple? Any help would be much
appreciated.
Warm Regards, ? Nima Hejazi -- Nima Hejazi Doctoral Student Division of Biostatistics University of California, Berkeley van der Laan Group <https://www.stat.berkeley.edu/~laan/> | Hubbard
Group
<http://hubbard.berkeley.edu/> http://www.stat.berkeley.edu/~nhejazi http://nimahejazi.org | Nima's blog <http://nimahejazi.org/blog/> [[alternative HTML version deleted]]
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