Hi Kevin,
Being that I am unable to fully reproduce the issue, I can only say that
I have been successful in running the steps in the Wercker build for a
different package.
Please do a *clean* pull of the Bioconductor image from docker hub by
removing any stale images
first.
Here is the wercker.yml that I used:
wercker build --docker-local
box: bioconductor/devel_core2
build:
steps:
- script:
name: Install devtools
code: R -e "install.packages('devtools')"
- jimhester/r-dependencies:
cran_dependencies: backports
- jimhester/r-check
- jimhester/r-coverage
*Note:*I removed the r-lint step because it was having some issues with
xml.
Regards,
Marcel
On 03/16/2018 07:53 AM, Kevin RUE wrote:
Dear all,
I'm usually a big Travis CI fan, but I'm having a go at Wercker, using
bioconductor/devel_core2 docker (I have also tried the rocker 'parent'
without further success).
I am running into the following issue:
[...]
* creating vignettes ... ERROR
Error: processing vignette 'NewPackage-vignette.Rmd' failed with
diagnostics:
package ?backports? was installed by an R version with different
it needs to be reinstalled for use with this R version
Execution halted
Error: Command failed (1)
In addition: Warning message:
`cleanup` is deprecated
Execution halted
Check Failed, dumping logs
find: ?./*.Rcheck?: No such file or directory
failed: Check Failed
I've tried adding a task that re-installs the `backports` package from
source (CRAN), but I still get the same error.
My wercker.yml looks like:
box: bioconductor/devel_core2
build:
steps:
- script:
name: Install devtools
code: R -e "install.packages('devtools')"
- script:
name: Install backports
code: R -e "install.packages('backports')"
- jimhester/r-dependencies
- jimhester/r-check
- jimhester/r-lint
- jimhester/r-coverage
Any help/advice/experience with Wercker would be greatly appreciated!
Best wishes,
Kevin
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