[Bioc-devel] Fwd: SpliceWiz problems reported in the Multiple platform build/check report for BioC 3.19

Hi there,

I am getting errors in the SpliceWiz build on BIoc 3.19. However I cannot
reproduce this issue on our local server using the bioconductor docker.

The vignette failure appears to be due to a section of code that fetches a
cached data file using BiocFileCache. The data files are downloaded on
first use, and then recalled from cache on subsequent uses.

Given the code has failed on a step that reads a cached file (it throws an
error on bioconductor servers, but cannot be reproduced locally), I highly
suspect the issue is with corrupt cached files on the bioc servers

Could the administrators manually remove the SpliceWiz cache to see whether
this is the issue? The SpliceWiz cache is located in
tools::R_user_dir(package = "SpliceWiz", which = "cache")

Thanks in advance,

Alex

---------- Forwarded message ---------
From: <BBS-noreply at bioconductor.org>
Date: Sat, 29 Jun 2024 at 09:00
Subject: SpliceWiz problems reported in the Multiple platform build/check
report for BioC 3.19
To: <a.wong at centenary.org.au>


[This is an automatically generated email. Please don't reply.]

Hi SpliceWiz maintainer,

According to the Multiple platform build/check report for BioC 3.19,
the SpliceWiz package has the following problem(s):

  o ERROR for 'R CMD build' on nebbiolo1. See the details here:

https://secure-web.cisco.com/1e8lcf3mAVvr-IJ2EkKaQD4b_mU7GnHCzu3_VG4r9l29HL6xPa-bkdx1Kqu4IflM7BcILp7sRXBgMPQM6KE-S4pMU9KWKp72N2xgGFaeOfO4TMhjlxNXXS_WTcCcorVsCSSne6HUnG2-C9i9mHjZFXuGNQFng7XXoQtcGYzc47cLOYuMhaPKKlZW7KvtM94utUMK5enxPi0Ae0Y4HBXBnN5CztoOZJVNDuhT5jAZxUrG86VskDXCcTdlpEyW2Jbpy7wfiicV11PvuhRGuz4gov3uolZgxGcHmSwpMrCHg-INBqK3jnyudSfksE3myEPLm/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.19%2Fbioc-LATEST%2FSpliceWiz%2Fnebbiolo1-buildsrc.html

Please take the time to address this by committing and pushing
changes to your package at git.bioconductor.org

Notes:

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Thanks for contributing to the Bioconductor project!



--

*Alex Wong BSc(Med)/MBBS FRACP FRCPA PhD*
Research Officer, Gene and Stem Cell Therapy Program, Centenary Institute

--
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