[Bioc-devel] Boost packaged on rforge
Hi Vincent, BH currently works the way that the package sources (and that includes BH/inst/include/boost/*) are automagically created by bcp'ing the dependencies of *some* R packages (e.g. bigmemory on rforge). John and Dirk et al said that people can ask for additional dependencies on the tracker [1]. If you want to port your package to BH and figure out the required dependencies, check out svn://r-forge.r-project.org/svnroot/boostheaders and edit boostheaders/CreateBoost.R (see how I munged that file on [2] ...) Then iterate over cd boostheaders rm -rf pkg/BH R --vanilla <CreateBoost.R R CMD INSTALL pkg/BH R CMD INSTALL /your/package/ until success. Unfortunately with boost, it might not be as straightforward as adding " graph ", that's why I have that insane "find /my/package -exec bcp -scan" in my hacked [2]. Also note that in a hacked version of CreateBoost.R it is possible to switch between boost versions. Yours, Steffen [1] https://r-forge.r-project.org/tracker/?atid=5310&group_id=1469&func=browse [2] https://github.com/sneumann/boostheaders/blob/master/CreateBoost.R
On Wed, 2013-05-01 at 22:47 -0400, Vincent Carey wrote:
are the headers for the "boost graph library" purposely excluded? i
do not see them in BH/include
On Wed, May 1, 2013 at 6:19 PM, Steffen Neumann
<sneumann at ipb-halle.de> wrote:
Hi BioC world,
I'd like to draw the attention to the boostheaders (or BH)
package on rforge.org [1], which packages the boost headers
so that other packages can link/include them.
I know a few packages on BioC are using -- and embedding --
boost.
There have also been some discussion a long time ago [2]
This might be a chance to get a single package that contains
boost ?
Yours,
Steffen
[1] http://r-forge.r-project.org/projects/boostheaders/
[2]
https://stat.ethz.ch/pipermail/bioc-devel/2009-February/001808.html
--
IPB Halle AG Massenspektrometrie &
Bioinformatik
Dr. Steffen Neumann http://www.IPB-Halle.DE
Weinberg 3 http://msbi.bic-gh.de
06120 Halle Tel. +49 (0) 345 5582 - 1470
+49 (0) 345 5582 - 0
sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409
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IPB Halle AG Massenspektrometrie & Bioinformatik Dr. Steffen Neumann http://www.IPB-Halle.DE Weinberg 3 http://msbi.bic-gh.de 06120 Halle Tel. +49 (0) 345 5582 - 1470 +49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409