[Bioc-devel] Need update access agaisnt package 'banocc'
The last push we had on the git server location was Oct 17th.
commit 9aee5761aaa97a063882a85295747640ec405dfb
Author: George Weingart <george.weingart at gmail.com>
Date: Wed Oct 17 21:00:43 2018 -0700
Updated the version number
We have not received any valid push after this date and this is Version: 1.5.2 as per the DESCRIPTION. The package does not have a WARNING it has an ERROR but only in windows
http://bioconductor.org/checkResults/devel/bioc-LATEST/banocc/
Your package will still be included in the release and we encourage you to look into this ERROR when you get a chance as having the package ERROR on windows will make in unavailable on this platform and lose a lot of potential users. Let us know if you are having any troubles with the ERROR by starting a post at bioc-devel at r-project.org
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of George Weingart <george.weingart at gmail.com>
Sent: Tuesday, October 30, 2018 1:27:10 AM
To: Turaga, Nitesh
Cc: Bioc-devel; Huttenhower, Curtis
Subject: Re: [Bioc-devel] Need update access agaisnt package 'banocc'
Sent: Tuesday, October 30, 2018 1:27:10 AM
To: Turaga, Nitesh
Cc: Bioc-devel; Huttenhower, Curtis
Subject: Re: [Bioc-devel] Need update access agaisnt package 'banocc'
Could I trouble you to look at banocc 1.5.2 that I pushed: it has a warning- Is that ok or can we leave it like that to be released? On Fri, Oct 19, 2018 at 4:07 PM George Weingart <george.weingart at gmail.com> wrote: > Could I trouble you to look at banocc 1.5.2 that I pushed: it has a > warning- > Is that ok or can we leave it like that to be released? > > On Thu, Oct 18, 2018 at 7:21 AM Turaga, Nitesh < > Nitesh.Turaga at roswellpark.org> wrote: > >> After a push is made it can take up to 48 hours for it to appear on the >> build report and landing pages - i.e. we do one pull, build, check, >> propagate in 24 hours - so if your commit was after the pull for the day it >> wont be until the following day >> >> >> >> > On Oct 18, 2018, at 10:03 AM, George Weingart < >> george.weingart at gmail.com> wrote: >> > >> > Hello, >> > >> > Seems I have been able to push successfully but I do not see the build >> report - Did I do something wrong or am I alooking at the wrong place? >> > See enclosed screen print >> > >> > Thanks for your help ! >> > >> > Tanias-MacBook-Air:banocc georgeweingart$ git push origin master >> > Counting objects: 8, done. >> > Delta compression using up to 4 threads. >> > Compressing objects: 100% (8/8), done. >> > Writing objects: 100% (8/8), 1.02 KiB | 1.02 MiB/s, done. >> > Total 8 (delta 6), reused 0 (delta 0) >> > To git.bioconductor.org:packages/banocc >> > 756f013..9aee576 master -> master >> > >> > >> > On Thu, Oct 18, 2018 at 5:16 AM Turaga, Nitesh < >> Nitesh.Turaga at roswellpark.org> wrote: >> > > origin git at git.bioconductor.org:packages/myPackage.git (fetch) >> > > origin git at git.bioconductor.org:packages/myPackage.git (push) >> > >> > >> > >> > Typo in there, its ?..org:packages/.." >> > >> > > On Oct 17, 2018, at 10:47 PM, Turaga, Nitesh >> <Nitesh.Turaga at RoswellPark.org> wrote: >> > > >> > > Your remotes should look like this, >> > > >> > > origin git at git.bioconductor.org/packages/myPackage.git (fetch) >> > > origin git at git.bioconductor.org/packages/myPackage.git (push) >> > > >> > > Access is through SSH protocol, not HTTPS. >> > > >> > > ? SSH (developer) read / write access: git at git.bioconductor.org >> > > ? HTTPS (public) read only access: https://git.bioconductor.org >> > > >> > > >> > > Please check http://bioconductor.org/developers/how-to/git/. >> > > >> > > Also, http://bioconductor.org/developers/how-to/git/faq/ (#13). >> > > >> > > Best, >> > > >> > > Nitesh >> > > >> > > >> > >> On Oct 17, 2018, at 9:57 PM, George Weingart < >> george.weingart at gmail.com> wrote: >> > >> >> > >> Hi, >> > >> >> > >> This is a follow up to Valerie?s response in regards to the >> permission to >> > >> update ?banocc? >> > >> >> > >> I am still getting an error message when I am trying to push: >> > >> >> > >> >> > >> Tanias-MacBook-Air:banocc georgeweingart$ git push origin master >> > >> >> > >> fatal: remote error: FATAL: W any packages/banocc nobody DENIED by >> fallthru >> > >> >> > >> (or you mis-spelled the reponame) >> > >> >> > >> >> > >> Am I doing something wrong or am I still not permitted to update the >> > >> repository ? >> > >> >> > >> Thanks! >> > >> >> > >> George Weingart PhD >> > >> >> > >> Huttenhower Lab >> > >> >> > >> Harvard School of Public Health >> > >> >> > >> >> > >> DETAILS >> > >> >> > >> List of remotes >> > >> >> > >> Tanias-MacBook-Air:banocc georgeweingart$ git remote -v >> > >> >> > >> origin https://git.bioconductor.org/packages/banocc (fetch) >> > >> >> > >> origin https://git.bioconductor.org/packages/banocc (push) >> > >> >> > >> Log of the commits >> > >> >> > >> Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline >> > >> >> > >> 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and >> added >> > >> parms to enable correct compile using C++11 >> > >> >> > >> 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite >> > >> mentions with BiocManager >> > >> >> > >> ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7 >> branch >> > >> >> > >> d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to >> > >> creation of RELEASE_3_7 branch >> > >> >> > >> 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9 >> > >> >> > >> 63d51b8 mark as unsupported on 32-bit windows; the builders only have >> > >> 64-bit pandoc >> > >> >> > >> 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6 >> branch >> > >> >> > >> 40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to >> > >> creation of RELEASE_3_6 branch >> > >> >> > >> b471035 bump x.y.z versions to odd y after creation of 3_5 branch >> > >> >> > >> e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch >> > >> >> > >> 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons, >> RIVER, >> > >> BioMedR, banocc >> > >> >> > >> >> > >> >> > >> >> > >> Beginning of the extended log of the commits >> > >> >> > >> Tanias-MacBook-Air:banocc georgeweingart$ git log >> > >> >> > >> commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master) >> > >> >> > >> Author: George Weingart <george.weingart at gmail.com> >> > >> >> > >> Date: Wed Oct 17 18:42:24 2018 -0700 >> > >> >> > >> Modified DESCRIPTION to update contacts and added parms to enable >> > >> correct compile using C++11 >> > >> >> > >> commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master, >> origin/HEAD) >> > >> >> > >> Author: LiNk-NY <mramos09 at gmail.com> >> > >> >> > >> Date: Tue Aug 28 18:51:28 2018 -0400 >> > >> >> > >> replace BiocInstaller biocLite mentions with BiocManager >> > >> >> > >> commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6 >> > >> >> > >> Author: vobencha <valerie.obenchain at roswellpark.org> >> > >> >> > >> Date: Mon Apr 30 10:41:43 2018 -0400 >> > >> >> > >> bump x.y.z versions to odd y after creation of RELEASE_3_7 branch >> > >> >> > >> commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7) >> > >> >> > >> Author: vobencha <valerie.obenchain at roswellpark.org> >> > >> >> > >> Date: Mon Apr 30 10:35:46 2018 -0400 >> > >> >> > >> bump x.y.z versions to even y prior to creation of RELEASE_3_7 >> branch >> > >> >> > >> >> > >> On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie < >> > >> Valerie.Obenchain at roswellpark.org> wrote: >> > >> >> > >>> Hi George, >> > >>> >> > >>> Thanks for letting us know - you should now have access. >> > >>> >> > >>> Valerie >> > >>> >> > >>> >> > >>> On 10/17/18 10:50 AM, George Weingart wrote: >> > >>> >> > >>> Hello, >> > >>> >> > >>> The package banocc has a build error - I was given the task to fix >> it and >> > >>> update the "Maintainer" information to include me and the head of >> our Lab, >> > >>> Prof. Curtis Huttenhower. >> > >>> >> > >>> The package was developed originally by Emma Schwager who has left >> our Lab. >> > >>> >> > >>> I cloned the package, made the necessary changes, ran a successful >> BUILD , >> > >>> CHECK, BiocCheck and committed the changes and am ready to push the >> > >>> changes, but I am getting a "permission denied" message - and >> indeed, I >> > >>> see in my profile I can update only ccrepe. >> > >>> >> > >>> I need update access against 'banocc" >> > >>> >> > >>> Thanks! >> > >>> >> > >>> George Weingart PhD >> > >>> >> > >>> Huttenhower Lab >> > >>> >> > >>> Harvard School of Public Health >> > >>> >> > >>> [[alternative HTML version deleted]] >> > >>> >> > >>> _______________________________________________ >> Bioc-devel at r-project.org mailing listhttps:// >> stat.ethz.ch/mailman/listinfo/bioc-devel >> > >>> >> > >>> >> > >>> >> > >>> This email message may contain legally privileged and/or >> confidential >> > >>> information. 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