Message-ID: <CAKs2jje7VhMiGnPTV8-EBpHbh8x4Vz3wKb_dw0WExPQL5FMPHA@mail.gmail.com>
Date: 2025-10-11T06:50:52Z
From: Kaur Alasoo
Subject: [Bioc-devel] wiggleplotr vignette build fails with R CMD build
Hello,
I am the maintainer of the wiggleplotr package and I have an error in
the vignette that I cannot seem to figure out.
When I look at the build report (
https://bioconductor.org/checkResults/devel/bioc-LATEST/wiggleplotr/nebbiolo2-buildsrc.html)
I see the following error:
Quitting from wiggleplotr.Rmd:65-67 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plotTranscripts()`:
! object 'ccds' not found
---
Backtrace:
?
1. ??wiggleplotr::plotTranscripts(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
I can reproduce this error when I run R CMD build on my computer. However,
when I try to debug the code interactively in R then everything works fine.
I've not made any changes to the code or the package data outside the
vignette.
Is there something obvious that I am missing?
Best,
Kaur
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