[Bioc-devel] Package Classifications via BiocViews
Changing the biocviews is not sufficient. There needs to be work on our end to change the manifest the package belongs to and to clear the build products from the data repositories so it is only found in one location. Are you sure you want to proceed with switching? It is not trivial on our end. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Burak Ogan Mancarci <ogan.mancarcii at gmail.com>
Sent: Wednesday, September 28, 2022 9:17 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Package Classifications via BiocViews
Sent: Wednesday, September 28, 2022 9:17 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Package Classifications via BiocViews
Hi, I am a developer working on the bioconductor package gemma.R <https://secure-web.cisco.com/1wIQY41Mq8CRYqLq1luoPm43XSj6Icl27w6udr35y-BxPHgEP6B5pApAAeBdBeWsydixV0CSwBVIVl2C7mJykPI3ESX7qtp-xJOSvJAu4T1yzHr3CWRc7s6LY_WtIcrnzfyw3MI7z0oqv1hzA1x5oRN1kFZ-KF6tttbi86SwIwZhYADSMaK1xXJxmlZ0Oe8CtJ6jKBrSjnn6fnDONMFHadvspGk8Gxc7N15gdoVzcbADiR0q1V7O973S1e0Fu6CFPAayqcCBKIOs4_xfp6nm1HNupK82P0Bawyi3Bc4Fu2vcDQKLcgU-gyiBMkego3WW4/https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.16%2Fdata%2Fexperiment%2Fhtml%2Fgemma.R.html>. On publication we have used the ExperimentData biocview to classify the package but we believe this was not the correct decision since the package's function is to access a database much like geoquery. I was wondering if it was safe to change the classification on our end by changing biocviews directly or if it would cause issues with the bioconductor infrastructure? Cheers, Ogan [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1T5fXNWrq0wVkhsBGGZem_PrfqZL4JVbxk93lJB7cvCmSzN0HQXSMpdqsrdB-M-09zasav4vj733ww5BnQASs1jdsouSO0jb4woXH7k0uksmqx3BhiCXJy0Mwx7Lm3Y-CZdMcl-wRht_iwp5HSLm92GQ0X9FlCbqajgbnLRL79fA6nWZAIFiGim4shu4ZdLRn1HpNCM-UApMLDl1YReeF_UVn6EWI1QphpP--G8sq4j0nYkOefHddWPyHlTNwCg-f2aZd94WzVyCs9rzrmaF54N8FmJ-RTYeRHbVsmsWez047xQCe1sEkuv5HUjkC8Wqy/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.