[Bioc-devel] Check error on malbec2
Yes, it is. Aimin On Wed, Apr 5, 2017 at 7:20 AM, Shepherd, Lori <
Lori.Shepherd at roswellpark.org> wrote:
Are these permanent system files or files that are created during examples/vignettes? Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ------------------------------ *From:* Aimin Yan <aimin.at.work at gmail.com> *Sent:* Tuesday, April 4, 2017 3:41:02 PM *To:* Shepherd, Lori *Cc:* bioc-devel at r-project.org *Subject:* Re: [Bioc-devel] Check error on malbec2 Thank you, I changed to use tempdir(), and it works now. One more question is how to locate those outputs in temporary directory since I want users to use those outputs. Aimin On Tue, Apr 4, 2017 at 2:00 PM, Shepherd, Lori < Lori.Shepherd at roswellpark.org> wrote:
Write and access your output to a temporary directory instead using
tempdir().
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------
*From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Aimin
Yan <aimin.at.work at gmail.com>
*Sent:* Tuesday, April 4, 2017 1:45:28 PM
*To:* bioc-devel at r-project.org
*Subject:* [Bioc-devel] Check error on malbec2
In the package I am trying ti submit to bioconductor, I got the following
error for check.
Warning in dir.create(output.file.dir) :
cannot create dir '/home/pkgbuild/OutputEnmap', reason 'Permission
denied'
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/pkgbuild/OutputEnmap/enrichmap_GO.xls': No such
file or directory
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: enrichmentmap -> write.table -> file
It seems I do not have permission to create a directory.
Does anyone know how to fix this check error?
Thanks,
Aimin
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