[Bioc-devel] Install and check error in Windows without any relevant message
Hi Ramon, This looks like a communication problem between riesling1 and nebbiolo1. Hopefully this is something transient. Fingers crossed! Cheers, H.
On 11/05/2021 16:38, Ramon Diaz-Uriarte wrote:
To partially answer myself, on looking more carefully, the INSTALL problem seems to happen in the call to curl.exe (i.e., not in the R package installation itself per se). It seems this failed C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/OncoSimulR_2.99.94.tar.gz even if the tar.gz is actually there. Can I assume this is probably a transient error? And if I understand correctly the CHECK error ("Installation failed. See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for details") it can also be traced to a curl problem? Best, On Tue, 11-May-2021, at 20:15:24, Ramon Diaz-Uriarte <rdiaz02 at gmail.com> wrote:
Dear All, I package I maintain (OncoSimulR), which has not experienced any changes in the last week, has failed Install and Check (but not Build or Build bin) on Windows (https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-install.html https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-checksrc.html ). However, I do not know what to do given the error output. For Install the message is curl: (52) Empty reply from server And for Check is just * checking whether package 'OncoSimulR' can be installed ... ERROR Installation failed. See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for details. * DONE Status: 1 ERROR See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00check.log' for details. curl: (52) Empty reply from server I do not use curl in the code. Is this a problem fetching dependencies or a problem caused by a package I depend on? Thanks, R.
Herv? Pag?s Bioconductor Core Team hpages.on.github at gmail.com