[Bioc-devel] Error after upgrading to R 3.2.0 with loading of GO.db: 2 arguments passed to .Internal(ls) which requires 3
Hello everyone, after updating to fresh R 3.2.0 from R 3.1.3, GO.db, org.Dm.eg.db and org.Hs.eg.db are failed to load (sorry for non-english environment):
library("GO.db")Error : .onLoad ?? ??????? ? loadNamespace() ??? 'GO.db', ???????????:
?????: ls(envir, all.names = TRUE) ??????: 2 ????????? ???????? ? .Internal(ls), ? ????????? 3??????: ?? ??????? ???????? ?????? ??? ???????????? ???? ??? ?GO.db?
traceback()2: stop(gettextf("package or namespace load failed for %s", sQuote(package)),
call. = FALSE, domain = NA)
1: library("GO.db")
sessionInfo()R version 3.2.0 (2015-04-16)
Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.10 locale: [1] LC_CTYPE=ru_RU.UTF-8 LC_NUMERIC=C LC_TIME=ru_RU.UTF-8 [4] LC_COLLATE=ru_RU.UTF-8 LC_MONETARY=ru_RU.UTF-8 LC_MESSAGES=ru_RU.UTF-8 [7] LC_PAPER=ru_RU.UTF-8 LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=ru_RU.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets methods [9] base other attached packages: [1] BiocInstaller_1.16.2 RSQLite_1.0.0 DBI_0.3.1 AnnotationDbi_1.28.2 [5] GenomeInfoDb_1.2.5 IRanges_2.0.1 S4Vectors_0.4.0 GEOquery_2.32.0 [9] Biobase_2.26.0 BiocGenerics_0.12.1 loaded via a namespace (and not attached): [1] Rcpp_0.11.5 MASS_7.3-40 munsell_0.4.2 colorspace_1.2-6 stringr_0.6.2 [6] plyr_1.8.1 tools_3.2.0 grid_3.2.0 gtable_0.1.2 digest_0.6.8 [11] reshape2_1.4.1 ggplot2_1.0.1 bitops_1.0-6 RCurl_1.95-4.5 scales_0.2.4 [16] XML_3.98-1.1 proto_0.3-10 Are there any way to fix this?
*Sincerely,* *Sergei Ryazansky, PhD* *IMG RAS, Moscow* [[alternative HTML version deleted]]