[Bioc-devel] DeMixT issue
Hi Nitesh, Thank you very much for detailed explanation. Since there is a major change in our package, we decided to bump version from 1.3.1 to 1.5.0 under devel branch. I did push repository from local machine into bioconductor from 1.3.1 --> 1.4.0 and the second try was from 1.3.1 --> 1.5.0; but both of these two 'push' have been rejected with error: Illegal version bump from '1.3.1' to '1.4.0' and Illegal version bump from '1.3.1' to '1.5.0'. However, my last try was from 1.3.1 --> 1.3.2 and it succeed. I just double checked all the files in updatedremote/upstream/master has been updated. I apologize for making it inconvenience since I just took over the job to maintain the package, and thanks again for the help. Best, Peng Quoting "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org>:
Hi Peng,
I was looking through your version bumps, and it looks a little
off-track I have to say. The version bumps you should have in your
repository should be following the order(from the commit below)
should be 1.3.0 --> 1.3.1 --> 1.3.2 and so on.
commit c358f5e7d8564423fb60abea7024b01068046ea8
Author: Nitesh Turaga <nitesh.turaga at gmail.com>?
Date: 2019-10-29 13:43:32 -0400?
?
bump x.y.z version to odd y after creation of RELEASE_3_10 branch?
?
diff --git a/DESCRIPTION b/DESCRIPTION?
index c922ad7..8fff467 100644?
--- a/DESCRIPTION?
+++ b/DESCRIPTION?
@@ -2,7 +2,7 @@ Package: DeMixT?
Title: Cell type-specific deconvolution of heterogeneous tumor samples with?
two or three components using expression data from RNAseq?
or microarray platforms?
-Version: 1.2.0?
+Version: 1.3.0
But it seems like this order has been lost somehow and you started
with 1.4.0 and 1.5.0. I'm actually surprised you were able to push
up these changes to the repository as the git hook should have
prevented you from making 1.3.0 --> 1.4.0. An important question is,
did you "push" your commits to the Bioconductor git repository
after accumulating multiple commits on your local machine?
This commit should have been declined by the hook,
commit c17654aa8f76e36faf143deedf0495619567459a
Author: pengyang0411 <pengyang0411 at gmail.com>?
Date: Sun Jan 12 22:26:37 2020 -0600?
?
update to v1.4.0?
?
diff --git a/DESCRIPTION b/DESCRIPTION?
index 62a7290..9b5a6b8 100644?
--- a/DESCRIPTION?
+++ b/DESCRIPTION?
@@ -1,7 +1,7 @@?
Package: DeMixT?
Title: Cell type-specific deconvolution of heterogeneous tumor
samples with two or three?
components using expression data from RNAseq or microarray platforms?
-Version: 1.3.0?
+Version: 1.4.0?
Date: 2020-01-06
And you have this commit(7fa3d1b4e97a48112634452ac752a9fed8ade493)
taking it to 1.5.0 and then this one
(f5c7fdc25ed18dc21f16f02bdc20a1805efa2b50) to 1.5.1.
We'll have to figure out a way to fix your version numbers. But as
far as the build report goes, if you pushed all your commits in
today, then you'll have to wait for the nightly builders to produce
the build report tomorrow.
We'll get back to you on a path forward.
Best,
Nitesh
________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of py11 <py11 at rice.edu> Sent: Wednesday, January 15, 2020 7:46 PM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] DeMixT issue Hi Bioconductor team, I just pushed the latest version from 1.3.1 to 1.3.2 into devel branch; however, there is no changes on the DeMixT website in biocondoctor, https://bioconductor.org/packages/devel/bioc/html/DeMixT.html Can you help me update it or is there anything I can do? Thanks, Peng _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.