[Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "
Dear Lluis and Vincent, Thanks for confirming this in other packages. In the two examples shown, these must be false positives, as the links exist. But also the fact that the warnings only appear in Windows suggests a false positive: I do not understand how this warning would not be triggered in Linux and Mac if the links did not exist. Best, R.
On Fri, 06-April-2018, at 16:44:42, Llu?s Revilla <lluis.revilla at gmail.com> wrote:
I have recently faced a similar warning. This is when a link to a help page of another package is broken (there is not such help page). Although those could be false positives: mclapply help page does exists in parallel package. as.MAList does exists in devel limma HTH On 6 April 2018 at 16:35, Vincent Carey <stvjc at channing.harvard.edu> wrote:
ive seen this too apropos bigrquery on windows On Fri, Apr 6, 2018 at 10:22 AM Ramon Diaz-Uriarte <rdiaz02 at gmail.com> wrote:
Dear All, Two packages I maintain are showing, in Windows, a warning during check with messages like Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp21WlQD/R.INSTALL23343f935731/
OncoSimulR/man/oncoSimulIndiv.Rd:570:
file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic or Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpQfQaA1/R.
INSTALL1ec81d5b6233/ADaCGH2/man/inputToADaCGH.Rd:45:
file link 'as.MAList' in package 'limma' does not exist and so has been
treated as a topic
that I cannot reproduce under Linux and that I think are false
positives. Is there a way to avoid this warning? As far as I can tell,
those links really exist.
Best,
R.
--
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzobispo Morcillo, 4
28029 Madrid
Spain
Phone: +34-91-497-2412
Email: rdiaz02 at gmail.com
ramon.diaz at iib.uam.es
http://ligarto.org/rdiaz
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--
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzobispo Morcillo, 4
28029 Madrid
Spain
Phone: +34-91-497-2412
Email: rdiaz02 at gmail.com
ramon.diaz at iib.uam.es
http://ligarto.org/rdiaz