[Bioc-devel] updating Bioconductor package that is already on Github
Dear all, I hope this isn't a duplicate of another question. Here goes: - I would like to update my swfdr package, which is already on Bioconductor. It is also on Github and my submission process was via opening an issue at https://github.com/Bioconductor/Contributions/issues/213 - At this point there are some slight differences between the Github and Bioconductor versions, for example the Bioconductor version number got automatically bumped to 1.0.0 upon acceptance - I would like to first synchronize what is on Github to have the current version that is on Bioconductor before updating and also include any updates in the next version of the package on Bioconductor - I did "git remote add upstream git at git.bioconductor.org:packages/swfdr.git" as per some of the instructions for developers, so that now I have: ~\Documents\GitHub\swfdr [master ? +0 ~0 -1 !]> git remote -v origin https://github.com/leekgroup/swfdr.git (fetch) origin https://github.com/leekgroup/swfdr.git (push) upstream git at git.bioconductor.org:packages/swfdr.git (fetch) upstream git at git.bioconductor.org:packages/swfdr.git (push) *but* when I try to fetch upstream content, via: git fetch upstream I get an error: ~\Documents\GitHub\swfdr [master ? +0 ~0 -1 !]> git fetch upstream Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights Am I missing something here? Alternatively, I suppose I can just make the changes I want and simply open another issue, although it would be nice to have an easy to sync it with what is already on Bioconductor. Thank you in advance for your help and I apologize if I missed anything obvious! Cheers, Simina
Simina M. Boca Assistant Professor Innovation Center for Biomedical Informatics (ICBI) Department of Oncology | Georgetown University Medical Center Department of Biostatistics, Bioinformatics and Biomathematics | Georgetown University Medical Center Cancer Prevention and Control Program | Lombardi Comprehensive Cancer Center 2115 Wisconsin Ave NW, Suite 110 Washington, DC 20007 Phone: (202) 687-1545 Fax: (202) 687-5011 http://icbi.georgetown.edu/boca [[alternative HTML version deleted]]