Message-ID: <BL1PR12MB53012051F3EAFA4BF2947E89F948A@BL1PR12MB5301.namprd12.prod.outlook.com>
Date: 2026-03-24T11:06:02Z
From: Shepherd, Lori
Subject: [Bioc-devel] wiggleplotr vignette errror: there is no package called 'arrow'
In-Reply-To: <CAKs2jjfKEuub6mXn4LEQuagdPpmR15_AiSw4KB8B=1TJn65FjQ@mail.gmail.com>
This has to do with the check for dependencies being declared properly. It looks like you are missing arrow in your DESCRIPTION file. If you add it to suggests it should clear up. See:
https://stat.ethz.ch/pipermail/bioc-devel/2023-March/019555.html
Lori Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Kaur Alasoo <kauralasoo at gmail.com>
Sent: Monday, March 23, 2026 2:55 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] wiggleplotr vignette errror: there is no package called 'arrow'
Hello!
I am the maintainer of the wiggleplotr package. Building of the vignette is
currently failing in devel on Linux with the following error message:
Error: processing vignette 'wiggleplotr.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ?wiggleplotr.Rmd?
SUMMARY: processing the following file failed:
?wiggleplotr.Rmd?
Error: Vignette re-building failed.
Execution halted
https://secure-web.cisco.com/1YhiRWflrNOXI8YrL6BTusw6ouFO_ri_FE3xC7recERzogLw2Z7ddSMmZ-uQFn0e3CQr5SSWtG0G2bJi2VVednbQT2P712wWSY_YieIa3JoXK7DiQ3tBTptG0Mo28WneRyQkDmELsDGDvwHSeGuIeb8DDV_OCa9e5QXQU-BIVQWoBid54wNpXGSEWRJcXw01ksiByTq0y58rGoZjHKd8W3ROMM5kbmc1pLZEQgKUF568bJ1ewlgQwUJSbaDFNoYgffTVdP5xHSH3phAdVv0sQEgrLlpDz5sEC_0MNKjFurP7lj4THI0rccFa3aHrpTu49/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.23%2Fbioc-LATEST%2Fwiggleplotr%2Fnebbiolo1-checksrc.html
Interestingly, there is no error on Mac:
https://secure-web.cisco.com/1YV6K_jxqsJMFC1_oreEIQicSZmbTEnmfbN-B0A2MXrj7S6LTe12hFFF7Qv9oO3pehdXPgE6FICHhrECz90GwViFMFxmpcpAjZz9turfdkHUL1Bc7RyBCKHmVaDj92DbHlVcHTnvuFVco7sZBCMl7E6Rz4hcdGK7YWx_rsqAEU3d2QwgRG6u6rEBch1idnQGYbczBx0ZSnqwl0UEswyHRuWaQjv0nyUmD4vvk2arCOSIvZWcLNKfazhgOa9LM8HJZ4FVYhZBYW64iKgB8Eb_z_6A3Cw7asoym6ely2Tt3ee_NyBq7x0eEg73NCo-IsyjN/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.23%2Fbioc-LATEST%2Fwiggleplotr%2Fkjohnson3-checksrc.html
What would be the best way to resolve this issue? I could remove the
parquet input example (which uses arrow) from the vignette, but this would
probably not be ideal.
Best,
Kaur
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