This seems to be a problem with a recent change to knitr
https://github.com/Bioconductor/BiocStyle/issues/71
https://github.com/yihui/knitr/issues/1797
Please follow these issues; it looks like it is fixed in the github
repository, but needs to be made available in CRAN for this to be fixed on
our build systems.
Martin
?On 1/20/20, 12:00 PM, "Bioc-devel on behalf of Zach Shao" <
bioc-devel-bounces at r-project.org on behalf of zach.shao at gmail.com> wrote:
Hello,
Not sure what to make of this error
with building the vingette by bioconductor.
The figures are all there.
Did something change with knitr?
Thank you.
Zach
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD build
--keep-empty-dirs --no-resave-data ERSSA
###
##############################################################################
##############################################################################
* checking for file ?ERSSA/DESCRIPTION? ... OK
* preparing ?ERSSA?:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ?ERSSA.Rmd? using rmarkdown
Quitting from lines 45-46 (ERSSA.Rmd)
Error: processing vignette 'ERSSA.Rmd' failed with diagnostics:
Magick: unable to open image
`/tmp/Rtmp9aQlKg/Rbuild6d1427846a56/ERSSA/vignettes/ERSSA_files/figure-html/unnamed-chunk-2-1.png':
No such file or directory @ error/blob.c/OpenBlob/2701
--- failed re-building ?ERSSA.Rmd?
SUMMARY: processing the following file failed:
?ERSSA.Rmd?
Error: Vignette re-building failed.
Execution halted
[[alternative HTML version deleted]]