[Bioc-devel] paxtoolsr Bioconductor Push Issues
As far as Git is concerned yes a change was made, but it was probably a move or a rename. So how do we move forward? paxtoolsr has been greater than 5MB for all of its history (4-5 years) on Bioconductor; the package cannot exist without that jar. Thanks, Augustin Luna On Thu, Sep 20, 2018 at 4:50 PM, Turaga, Nitesh
<Nitesh.Turaga at roswellpark.org> wrote:
Hi Augustin, There is a software package size limit to Bioconductor packages which is 5 MB. You cannot push because the pre-receive hook on the Bioconductor git repo is catching that it?s a bad commit. I guess you are making a change to the jar file for the first time after the git-hooks have been put in place(about 9-10 months ago) to make sure that packages are obeying the 5MB limit. Is this accurate? Best, Nitesh
On Sep 20, 2018, at 5:09 PM, Augustin Luna <augustin_luna at hms.harvard.edu> wrote: I've made needed changes to paxtoolsr for the next release. I cannot push to Bioconductor; see below. paxtoolsr is essentially a wrapper around the jar with helper functions; the jar has been there since the beginning. Please advise. Augustin Luna Writing objects: 100% (1252/1252), 22.33 MiB | 1.65 MiB/s, done. Total 1252 (delta 988), reused 741 (delta 596) remote: Resolving deltas: 100% (988/988), completed with 80 local objects. remote: Error: file larger than 5 Mb. remote: remote: File name: 'inst/java/paxtools-4.3.1.jar' remote: File size: 24.5 Mb remote: remote: Please see Biocondcutor guidelines remote: https://bioconductor.org/developers/package-guidelines/ remote: To git.bioconductor.org:packages/paxtoolsr.git ! [remote rejected] master -> master (pre-receive hook declined) error: failed to push some refs to 'git at git.bioconductor.org:packages/paxtoolsr.git'
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