[Bioc-devel] CRAN packages depending on broken Bioc 3.11 packages may be archived
Or remove the graph dependency
On Tue, Nov 26, 2019 at 3:16 PM James W. MacDonald <jmacdon at uw.edu> wrote:
Hi Lori, Let me know if you don't hear from Benilton. It shouldn't be much work to fix oligo - we could convert to using Gviz for the graphic that is currently using GenomeGraphs. I can make the change next week if necessary. Best, Jim On Tue, Nov 26, 2019 at 12:57 PM Shepherd, Lori < Lori.Shepherd at roswellpark.org> wrote:
typo - heatplus and topGO have responded directly. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Shepherd, Lori <Lori.Shepherd at RoswellPark.org> Sent: Tuesday, November 26, 2019 12:54 PM To: Henrik Bengtsson <henrik.bengtsson at gmail.com>; bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: Re: [Bioc-devel] CRAN packages depending on broken Bioc 3.11 packages may be archived All of these package have been notified from the Bioconductor side as well. We hope the maintainers will respond shortly. heatmap and topGO have responded directly and are working on fixes. I hope the others are too. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Henrik Bengtsson <henrik.bengtsson at gmail.com> Sent: Tuesday, November 26, 2019 12:47 PM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] CRAN packages depending on broken Bioc 3.11
packages
may be archived In case it's not known, paraphrasing from CRAN notification email, CRAN [sic!] packages: TROM, demi, diffMeanVar, maGUI, metaboGSE risk being archived on December 7 because broken Bioconductor
dependencies:
Heatplus, missMethyl, oligo, oligoClasses, topGO prevent pdInfoBuilder from being installed. I don't maintain any of the above - I'm just the messenger. /Henrik
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Environmental and Occupational Health Sciences
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