Hi Nitesh,
Thanks. Unfortunately, I can't connect to the Bioconductor repository that
way:
*cwarden$ git clone git at git.bioconductor.org/packages/COHCAP.git
<http://git at git.bioconductor.org/packages/COHCAP.git>*
*fatal: repository 'git at git.bioconductor.org/packages/COHCAP.git
<http://git at git.bioconductor.org/packages/COHCAP.git>' does not exist*
However, I can connect and update the GitHub repository with the SSH
commands:
cwarden$ git clone git at github.com:cwarden45/COHCAP.git
Cloning into 'COHCAP'...
Saving password to keychain failed
Identity added: /Users/cwarden/.ssh/id_rsa ((null))
remote: Counting objects: 59, done.
remote: Compressing objects: 100% (53/53), done.
remote: Total 59 (delta 9), reused 3 (delta 2), pack-reused 0
Receiving objects: 100% (59/59), 56.83 KiB | 0 bytes/s, done.
Resolving deltas: 100% (9/9), done.
Checking connectivity... done.
BR11252:COHCAP cwarden$ git status
On branch master
Your branch is up-to-date with 'origin/master'.
Changes not staged for commit:
(use "git add <file>..." to update what will be committed)
(use "git checkout -- <file>..." to discard changes in working directory)
modified: CHANGES
no changes added to commit (use "git add" and/or "git commit -a")
BR11252:COHCAP cwarden$ git commit -a -m "test commit"
[master f2aded7] test commit
1 file changed, 1 insertion(+)
BR11252:COHCAP cwarden$ git push
Warning: Permanently added the RSA host key for IP address '192.30.255.112'
to the list of known hosts.
Counting objects: 3, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (3/3), done.
Writing objects: 100% (3/3), 302 bytes | 0 bytes/s, done.
Total 3 (delta 2), reused 0 (delta 0)
remote: Resolving deltas: 100% (2/2), completed with 2 local objects.
To git at github.com:cwarden45/COHCAP.git
5285d59..f2aded7 master -> master
*If it helps with troubleshooting, I can also try to update the
Bioconductor repository as an upstream link to the GitHub repository, but
that also does not work (at the push step, see below):*
cwarden$ git clone git at github.com:cwarden45/COHCAP.git
Cloning into 'COHCAP'...
remote: Counting objects: 63, done.
remote: Compressing objects: 100% (55/55), done.
remote: Total 63 (delta 12), reused 7 (delta 4), pack-reused 0
Receiving objects: 100% (63/63), 57.24 KiB | 0 bytes/s, done.
Resolving deltas: 100% (12/12), done.
Checking connectivity... done.
cwarden$ cd COHCAP
COHCAP cwarden$ git remote -v
origin git at github.com:cwarden45/COHCAP.git (fetch)
origin git at github.com:cwarden45/COHCAP.git (push)
COHCAP cwarden$ git remote add upstream git at git.bioconductor.org:
packages/COHCAP.git
BR11252:COHCAP cwarden$ git remote -v
origin git at github.com:cwarden45/COHCAP.git (fetch)
origin git at github.com:cwarden45/COHCAP.git (push)
upstream git at git.bioconductor.org:packages/COHCAP.git (fetch)
upstream git at git.bioconductor.org:packages/COHCAP.git (push)
COHCAP cwarden$ git fetch upstream
warning: no common commits
remote: Counting objects: 485, done.
remote: Compressing objects: 100% (479/479), done.
remote: Total 485 (delta 328), reused 0 (delta 0)
Receiving objects: 100% (485/485), 110.22 KiB | 0 bytes/s, done.
Resolving deltas: 100% (328/328), done.