Message-ID: <AM0PR06MB4611E6C3DBBACFA68D5FF2EBA5809@AM0PR06MB4611.eurprd06.prod.outlook.com>
Date: 2021-02-23T13:42:47Z
From: Murphy, Alan E
Subject: [Bioc-devel] Reference ExperimentHub package in statistical package
Hi,
I have submitted an ExperimentHub package ewceData to Bioconductor's Github for consideration here<https://github.com/Bioconductor/Contributions/issues/1904>. I am next going to append a link to my statistical package repository once the status is updated to 'review in progress'. I am following the guide here:
https://github.com/Bioconductor/Contributions#submitting-related-packages
In the meantime, I want to ensure that the statistical package doesn't fail any checks based on the use of the ExperimentHub package ewceData. However, I don't know how to reference ewceData for use in my statistical package? I need the data from ewceData for both the vignette but also in some functions. I am running the devel version of Bioconductor (BiocVersion 3.13) and as such thought ewceData would be available there but the following fails:
BiocManager::install("ewceData")
What is the best practice way to do this? I could install reference the Github repository for ewceData in my statistical package but I imagine this would cause many issues down the line?
Kind regards,
Alan.
Alan Murphy
Bioinformatician
Neurogenomics lab
UK Dementia Research Institute
Imperial College London
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