[Bioc-devel] winbuilder1 in the workflow CI system offline ...

Hi Bernd,

I've restarted winbuilder1.bioconductor.org .  Jenkins seemed to reconnect
to it as soon as it was back online, and your job started running
<http://docbuilder.bioconductor.org:8080/job/maEndToEnd/label=winbuilder1/55/console>.
It's completed now.  Sad to say it seems to have failed (unrelated to the
Windows node) .  I remember some discussion about changes in `select()`,
but am not very familiar with those changes :

+ C:/Progra~1/R/R-3.2.2patched/bin/R CMD build c:/DOCBUILDER_TEMP/maEndToEnd

* checking for file 'c:/DOCBUILDER_TEMP/maEndToEnd/DESCRIPTION' ... OK
* preparing 'maEndToEnd':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command
'"C:/Progra~1/R/R-3.2.2patched/bin/x64/Rscript" --vanilla
--default-packages= -e "tools::buildVignettes(dir = '.', tangle =
TRUE)"' had status 1
 ERROR
trying URL 'http://www.ebi.ac.uk/arrayexpress/files/A-AFFY-141/A-AFFY-141.adf.txt'
Content type 'text/plain' length 94175098 bytes (89.8 MB)
==================================================
downloaded 89.8 MB

trying URL 'http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2967/E-MTAB-2967.sdrf.txt'
Content type 'text/plain' length 22516 bytes (21 KB)
==================================================
downloaded 21 KB

trying URL 'http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2967/E-MTAB-2967.idf.txt'
Content type 'text/plain' length 3407 bytes
==================================================
downloaded 3407 bytes

trying URL 'http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2967/E-MTAB-2967.raw.1.zip'
Content type 'application/zip' length 186452879 bytes (177.8 MB)
==================================================
downloaded 177.8 MB

trying URL 'http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2967/E-MTAB-2967.raw.2.zip'
Content type 'application/zip' length 38447870 bytes (36.7 MB)
==================================================
downloaded 36.7 MB

'select()' returned 1:many mapping between keys and columns
Quitting from lines 229-264 (dummy-Workflow.Rmd)
Error: processing vignette 'dummy-Workflow.Rmd' failed with diagnostics:
invalid genes selected
Execution halted
Build step 'Execute shell' marked build as failure

Hope this helps,
Brian