[Bioc-devel] Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle

Wed, May 1, 2013 10:29 AM

Bioconductors! Please join us for an intermediate course on use of R / 
Bioconductor for high-throughput sequence analysis, a brief outline of which is 
below.

More Information: https://secure.bioconductor.org/Seattle-May-2013/

Intermediate R / Bioconductor for High-Throughput Sequence Analysis introduces 
users with some R experience to common Bioconductor work flows for sequence 
analysis. The course involves a combination of presentations and hands-on 
exercises. Our starting point is BAM files created by aligning short reads to a 
reference genome. Topics include: exploratory analysis (GenomicRanges, 
Rsamtools); assessing differential expression of known genes (DESeq); detection, 
calling, and manipulation of variants (VariantTools, VariantAnnotation). We 
learn how to integrate results with curated gene and genomic annotations 
(GenomicFeatures), and to visualize results (GViz, ggbio).

See you in Seattle,

Martin

Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793