Message-ID: <518150E3.204@fhcrc.org>
Date: 2013-05-01T17:29:07Z
From: Martin Morgan
Subject: [Bioc-devel] Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle
Bioconductors! Please join us for an intermediate course on use of R /
Bioconductor for high-throughput sequence analysis, a brief outline of which is
below.
More Information: https://secure.bioconductor.org/Seattle-May-2013/
Intermediate R / Bioconductor for High-Throughput Sequence Analysis introduces
users with some R experience to common Bioconductor work flows for sequence
analysis. The course involves a combination of presentations and hands-on
exercises. Our starting point is BAM files created by aligning short reads to a
reference genome. Topics include: exploratory analysis (GenomicRanges,
Rsamtools); assessing differential expression of known genes (DESeq); detection,
calling, and manipulation of variants (VariantTools, VariantAnnotation). We
learn how to integrate results with curated gene and genomic annotations
(GenomicFeatures), and to visualize results (GViz, ggbio).
See you in Seattle,
Martin
--
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
Location: Arnold Building M1 B861
Phone: (206) 667-2793