[Bioc-devel] Importing get() method from GO.db
Herv? Pag?s wrote:
[...]
> showMethods("get")
Function: get (package base)
x="ANY", pos="AnnDbBimap", envir="missing"
x="ANY", pos="ANY", envir="AnnDbBimap"
x="ANY", pos="ANY", envir="ANY"
x="ANY", pos="GOTermsAnnDbBimap", envir="ANY"
(inherited from: x="ANY", pos="ANY", envir="ANY")
x="character", pos="GOTermsAnnDbBimap", envir="missing"
(inherited from: x="ANY", pos="AnnDbBimap", envir="missing")
x="character", pos="missing", envir="environment"
(inherited from: x="ANY", pos="ANY", envir="ANY")
Oops, this is more appropriate here:
> showMethods(AnnotationDbi::get)
Function: get (package base)
x="ANY", pos="AnnDbBimap", envir="missing"
x="ANY", pos="ANY", envir="AnnDbBimap"
x="ANY", pos="ANY", envir="ANY"
x="ANY", pos="GOTermsAnnDbBimap", envir="ANY"
(inherited from: x="ANY", pos="ANY", envir="ANY")
x="character", pos="GOTermsAnnDbBimap", envir="missing"
(inherited from: x="ANY", pos="AnnDbBimap", envir="missing")
x="character", pos="missing", envir="environment"
(inherited from: x="ANY", pos="ANY", envir="ANY")
just to make sure we are passing the generic we want to list the methods
for...
H.
Cheers, H.
> sessionInfo()
R version 2.10.0 Under development (unstable) (2009-06-15 r48781) x86_64-unknown-linux-gnu locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_CA.UTF-8 [7] LC_PAPER=en_CA.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] GO.db_2.3.0 RSQLite_0.7-1 DBI_0.2-4 [4] AnnotationDbi_1.7.7 Biobase_2.5.4
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Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319