[Bioc-devel] Trigger a new build after version bump

It seems like in your vignette you are trying to install your own package. But if you needed to install the package, then the vignette wouldn't be available to install it from... ;) In this code chunk

```{r results='hide',message=FALSE,warning=FALSE}
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager", repos = "http://cran.us.r-project.org")
BiocManager::install("OmicsLonDA")
```

Change the options to

```{r, eval = FALSE}

Martin

?On 12/19/19, 2:22 PM, "Bioc-devel on behalf of Ahmed Metwally" <bioc-devel-bounces at r-project.org on behalf of ametwall at stanford.edu> wrote:

    Hi,

    The built is has been done on the updates I pushed. Here you see that the release version has been bumped to 1.2.1 instead of 1.2.0 and dev version has been bumped to 1.3.3 instead of 1.3.0.

    However, I still see the same error as before. Here is the OS built results for the release branch: http://bioconductor.org/checkResults/release/bioc-LATEST/OmicsLonDA/merida1-buildsrc.html

    Command output

    ##############################################################################
    ##############################################################################
    ###
    ### Running command:
    ###
    ###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OmicsLonDA
    ###
    ##############################################################################
    ##############################################################################

    * checking for file ?OmicsLonDA/DESCRIPTION? ... OK
    * preparing ?OmicsLonDA?:
    * checking DESCRIPTION meta-information ... OK
    * installing the package to build vignettes
    * creating vignettes ... ERROR
    --- re-building ?OmicsLonDA.Rmd? using rmarkdown
    Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.2 (2019-12-12)
    Installing package(s) 'OmicsLonDA'
    trying URL 'https://bioconductor.org/packages/3.10/bioc/bin/macosx/el-capitan/contrib/3.6/OmicsLonDA_1.2.0.tgz'
    Content type 'application/x-gzip' length 5219591 bytes (5.0 MB)

    In the above snippet, it says "trying URL 'https://bioconductor.org/packages/3.10/bioc/bin/macosx/el-capitan/contrib/3.6/OmicsLonDA_1.2.0.tgz'
    "

    v1.2.0 is the old version. The new version is 1.2.1. Should I update anything to make sure BioC checks the new version "1.2.1"?

    Thanks,

[Bioc-devel] Trigger a new build after version bump

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