[Bioc-devel] AnnotationHub Integration
Yes it seems appropriate. Depending on the type of data maybe ExperimentHub would be preferred over AnnotationHub. It depends on what information you are providing. We do have multiple types of data provided in the hubs. Many data are in database type objects like sqlite and such. This is absolutely appropriate. Please reach out if you have any further questions. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Lihe Liu <lihe.liu at wisc.edu>
Sent: Tuesday, October 10, 2023 6:56 PM
To: hubs at bioconductor.org <hubs at bioconductor.org>; maintainer at bioconductor.org <maintainer at bioconductor.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Cc: Francisco Penagaricano <fpenagarican at wisc.edu>
Subject: AnnotationHub Integration
Sent: Tuesday, October 10, 2023 6:56 PM
To: hubs at bioconductor.org <hubs at bioconductor.org>; maintainer at bioconductor.org <maintainer at bioconductor.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Cc: Francisco Penagaricano <fpenagarican at wisc.edu>
Subject: AnnotationHub Integration
Hi Bioconductor team member, Hope you are doing well! My name is Lihe Liu, and we are a computational biology team from Animal & Dairy Science Department at UW-Madison. We have great interests in separate logic and data in our R package development by integrating AnnotationHub. I went over the CreateAHubPackage vignette and I have two questions: 1. Our data is not a typical ?annotation?, instead, we have multiple related tabular data items of multiple livestock species. Would this fit in the purpose of AnnotationHub? 2. On top of above, we very much prefer to organize the data in to a relational database (read-only), ideally with indexes built and support concurrency. Can we upload a portal database or it has to be built on the fly? Any other guidance/instructions would be highly appreciated! Thank you in advance! Best, Lihe This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.