[Bioc-devel] How to fix the error checked in the development version of miRspongeR
Thanks, Herv? for your reply. Now, this error has been fixed ( http://bioconductor.org/checkResults/3.16/bioc-LATEST/miRspongeR/). According to your suggestion, I have just imported the functions used in miRspongeR from SPONGE. In addition, I have removed the line 'library(SPONGE)' in vignettes. If possible, I will fork a part of functions in SPONGE instead of importing it. Regards, Junpeng. Herv? Pag?s <hpages.on.github at gmail.com> ?2022?9?24??? 03:00???
On 21/09/2022 07:57, Herv? Pag?s wrote:
Just a workaround and not a real solution but maybe try to switch the order of the clusterProfiler and SPONGE reports?
Oops, I meant "imports", not "reports". But, again, reducing the huge number of dependencies of both miRspongeR and SPONGE should be a priority. Something that you might want to discuss/coordinate with the SPONGE folks. Best, H. -- Herv? Pag?s Bioconductor Core Team hpages.on.github at gmail.com