Message-ID: <CAANT7+WPteUukR2KaLF8857dWxPfCXZcMzwN11nyRVmUC_ieiQ@mail.gmail.com>
Date: 2025-10-13T14:03:38Z
From: Vincent Carey
Subject: [Bioc-devel] wiggleplotr vignette build fails with R CMD build
In-Reply-To: <CAKs2jje7VhMiGnPTV8-EBpHbh8x4Vz3wKb_dw0WExPQL5FMPHA@mail.gmail.com>
I gather that this is resolved? If not please provide full
sessionInfo after the
error is triggered.
On Mon, Oct 13, 2025 at 9:56?AM Kaur Alasoo <kauralasoo at gmail.com> wrote:
>
> Hello,
>
> I am the maintainer of the wiggleplotr package and I have an error in
> the vignette that I cannot seem to figure out.
>
> When I look at the build report (
> https://bioconductor.org/checkResults/devel/bioc-LATEST/wiggleplotr/nebbiolo2-buildsrc.html)
> I see the following error:
>
> Quitting from wiggleplotr.Rmd:65-67 [unnamed-chunk-5]
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> <error/rlang_error>
> Error in `plotTranscripts()`:
> ! object 'ccds' not found
> ---
> Backtrace:
> ?
> 1. ??wiggleplotr::plotTranscripts(...)
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>
> I can reproduce this error when I run R CMD build on my computer. However,
> when I try to debug the code interactively in R then everything works fine.
> I've not made any changes to the code or the package data outside the
> vignette.
>
> Is there something obvious that I am missing?
>
> Best,
> Kaur
>
> [[alternative HTML version deleted]]
>
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