[Bioc-devel] change of maintainer and deprecated package to fix
Dear all, Thank you ? I?ve activated my BioCredentials account and uploaded my SSH public key. I?m also trying to subscribe to bioc-devel but I?m getting a proxy error for some reason upon clicking the Subscribe button: The proxy server received an invalid response from an upstream server. The proxy server could not handle the request Reason: Error reading from remote server I?ll try back again in some time. In the meantime I?m reading up on the documentation on how to change the DESCRIPTION file and will let you know if I have doubts about the procedure (especially in terms of using the Bioconductor github repo) Best, Matteo From: Kern, Lori <Lori.Shepherd at RoswellPark.org> Date: Monday, 14 March 2022 at 15.46 To: Nitesh Turaga <nturaga.bioc at gmail.com>, Elena Papaleo <elpap at dtu.dk> Cc: maintainer at bioconductor.org <maintainer at bioconductor.org>, bioc-devel at r-project.org <bioc-devel at r-project.org>, Matteo Tiberti <tiberti at cancer.dk>, Colaprico, Antonio <axc1833 at med.miami.edu>, antonio.colaprico at gmail.com <antonio.colaprico at gmail.com> Subject: Re: change of maintainer and deprecated package to fix Thank you for letting us know. We will un-deprecate MoonlightR now that it is building cleanly on all platforms except for macos. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Nitesh Turaga <nturaga.bioc at gmail.com>
Sent: Monday, March 14, 2022 10:43 AM
To: Elena Papaleo <elpap at dtu.dk>; Kern, Lori <Lori.Shepherd at RoswellPark.org>
Cc: maintainer at bioconductor.org <maintainer at bioconductor.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>; tiberti at cancer.dk <tiberti at cancer.dk>; Colaprico, Antonio <axc1833 at med.miami.edu>; antonio.colaprico at gmail.com <antonio.colaprico at gmail.com>
Subject: Re: change of maintainer and deprecated package to fix
Sent: Monday, March 14, 2022 10:43 AM
To: Elena Papaleo <elpap at dtu.dk>; Kern, Lori <Lori.Shepherd at RoswellPark.org>
Cc: maintainer at bioconductor.org <maintainer at bioconductor.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>; tiberti at cancer.dk <tiberti at cancer.dk>; Colaprico, Antonio <axc1833 at med.miami.edu>; antonio.colaprico at gmail.com <antonio.colaprico at gmail.com>
Subject: Re: change of maintainer and deprecated package to fix
Hi Elena and Matteo, Matteo, You will gain access to the package once you activate your BiocCredentials account and add your SSH keys (https://secure-web.cisco.com/12l5i6bgGm-AsWg6EcQlvcBxpN73A4LAGPK76qN-2EZ8PV2ZMVBiIG8dQo8RNV_Tkyfupq4YqCqWu-i-UCjVbyDAATYvi9HBhmVpQpLzbCleRCBN9x1CMXzIyIW0S6MZ5Ceh-YD5RBeF76xg6HKvLvNFaNlX7-oU2Smt39FxxMC2HghR-uARVOFZ28A4HmiwyUBaOg4i_GI0Z71aqK64Uwz2j4Rl3LHOYXg0zg4YgziDVFCkbruK8tqHUGHNwgBwcpa3oDD831sqFfBl_KkTsIMa_km0J5L0K5XRF92elqhspUWcy0Tf8T7ubp_SBYnnm/https%3A%2F%2Fgit.bioconductor.org%2FBiocCredentials%2Faccount_activation). Please change the maintainer (to yourself) in the DESCRIPTION file of the package as soon as you are ready with this change. I believe @Lori will be able to answer this question regarding deprecation for you. Best, Nitesh Nitesh Turaga Scientist II, Department of Data Science, Bioconductor Core Team Member Dana Farber Cancer Institute > On Mar 14, 2022, at 5:36 AM, Elena Papaleo <elpap at dtu.dk> wrote: > > > Dear Bioconductor maintainers, > > I'm Elena Papaleo from the Technical University of Denmark and the Danish Cancer Society Research Center. > > I am one of the principal investigator behind the development of the MoonlightR package currently in Bioconductor. We have realized that the package is now set as deprecated as it fails to build under macOS. Have I understood correctly that we need to fix the package so that the macOS build passes before the April the 4th for it to remain in Bioconductor? > > I am writing to let you know that we are interested in keeping up with the development of the package. The main maintenance is now covered almost entirely by my group. We would like to fix the build issue and we have a few other changes we'd like to push to the Bioconductor repository as well, in the short-medium term. In order to do this, we would like to change the maintainer from Antonio Colaprico (here in cc) to Matteo Tiberti (also in cc). His details are: > > Matteo Tiberti > tiberti at cancer.dk > ORCID: 0000-0003-2529-3594 > > Antonio if you can please approve this request here we can get it done. > > Many thanks > > Elena Papaleo This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.