[Bioc-devel] TLS error in vignette on all devel builds
On 09/15/2017 10:01 AM, Nan Xiao wrote:
Hi Vladimir, - it looks like the same issue as reported here a few days ago: https://stat.ethz.ch/pipermail/bioc-devel/2017-September/011540.html Probably due to the hs-tls bug which caused the communication errors between pandoc and Google servers.
so is this a 'pandoc' bug that could be / has been fixed, or can pandoc be invoked in a way that would avoid this? It's pretty obscure... Martin
Best, -Nan On Fri, Sep 15, 2017 at 5:40 AM, Vladimir Kiselev < vladimir.yu.kiselev at gmail.com> wrote:
Hi, In my package's (scmap) vignette I plot a Sankey digram using gvisSankey function from googleVis package. It used to work and the digram was plotted, but now there is this error (on devel branch - http://bioconductor.org/checkResults/devel/bioc- LATEST/scmap/malbec1-buildsrc.html ): pandoc: Could not fetch https://www.google.com/jsapi?callback=displayChartSankeyID249e5aae1d64 TlsExceptionHostPort (HandshakeFailed Error_EOF) "www.google.com" 443 Error: processing vignette 'scmap.Rmd' failed with diagnostics: pandoc document conversion failed with error 67 I suppose it's some network issue, since Sankey diagram are plotted through a web browser. I used to have the same problem on my laptop, but switching from wired network to WiFi fixed the issue. Any ideas on devel-build solutions? At the moment I switched the plotting off by using eval=FALSE. Many thanks, Vladimir -- http://genat.uk [[alternative HTML version deleted]]
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